View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2558_low_7 (Length: 381)

Name: NF2558_low_7
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2558_low_7
NF2558_low_7
[»] chr4 (3 HSPs)
chr4 (21-372)||(47503510-47503856)
chr4 (169-243)||(28336545-28336619)
chr4 (22-70)||(3172020-3172068)
[»] chr3 (4 HSPs)
chr3 (172-243)||(11483872-11483943)
chr3 (192-242)||(22310118-22310168)
chr3 (193-242)||(45207373-45207422)
chr3 (192-247)||(27175121-27175176)
[»] chr1 (1 HSPs)
chr1 (169-241)||(49130006-49130078)
[»] chr2 (3 HSPs)
chr2 (188-248)||(9070891-9070951)
chr2 (188-239)||(18140999-18141050)
chr2 (193-243)||(42083394-42083444)
[»] scaffold0477 (1 HSPs)
scaffold0477 (194-242)||(1136-1184)
[»] chr6 (2 HSPs)
chr6 (194-242)||(4650119-4650167)
chr6 (192-243)||(446014-446065)
[»] chr5 (1 HSPs)
chr5 (192-248)||(22635983-22636039)
[»] chr8 (2 HSPs)
chr8 (163-238)||(5336241-5336316)
chr8 (188-242)||(23890359-23890413)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 21 - 372
Target Start/End: Complemental strand, 47503856 - 47503510
Alignment:
Q  21 gtctgtatgaaatggttaagtagatcaggtattcagggacgaagggagtagttaaataggccgctgccctattttaccctggaactataacctaggtcgc 120  Q
    |||||| |||||||||||||||| ||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47503856 gtctgtgtgaaatggttaagtaggtcaagtattgaaggacggagggagtagttaaataggccgctgccctattttaccctagaactataacctaggtcgc 47503757  T
Q  121 tttatttaacgatgcatgttagcttgttgtgtaagattggcaatgtgattaggagggaaattagcatagcaattagggttaagcaattgcttgacctaat 220  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  47503756 tctatttaatgatgcatgttagcttgttgtgtaagattggcaatgtgattaggagggaaattatcatagcaattagggttaagcaattgcttgacttaat 47503657  T
Q  221 tagcttttagagtaagtatgatatgatatgtatcattgttgattacaaatctaattgattgaatgatgaaataacagaatnnnnnnnctttggattaaat 320  Q
    |||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| |||||||||    
T  47503656 tagcttttagagtaagtatga-----tatgtatcattgttgattacaaatctaattgattgaatgatgaaataacagaataaaaaaacttcggattaaat 47503562  T
Q  321 attttccctcttaaaactgatgcaatccaaataaactgagtagtagtataat 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47503561 attttccctcttaaaactgatgcaatccaaataaactgagtagtagtataat 47503510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 28336545 - 28336619
Alignment:
Q  169 ttaggagggaaattagcatagcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatgata 243  Q
    ||||||||||||| |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28336545 ttaggagggaaatcacaaaagcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatgata 28336619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 3172068 - 3172020
Alignment:
Q  22 tctgtatgaaatggttaagtagatcaggtattcagggacgaagggagta 70  Q
    ||||| ||||||||| |||||||||| ||||| ||||||||||||||||    
T  3172068 tctgtgtgaaatggtcaagtagatcaagtattgagggacgaagggagta 3172020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 11483872 - 11483943
Alignment:
Q  172 ggagggaaattagcatagcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatgata 243  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11483872 ggagggaaattagcatagcaattagggctaagcaattgcttgacctaattagcttttagagtaagtatgata 11483943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 22310118 - 22310168
Alignment:
Q  192 attagggttaagcaattgcttgacctaattagcttttagagtaagtatgat 242  Q
    |||||||||||||| || ||||||||||| |||||||||| ||||||||||    
T  22310118 attagggttaagcatttacttgacctaataagcttttagaataagtatgat 22310168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 45207422 - 45207373
Alignment:
Q  193 ttagggttaagcaattgcttgacctaattagcttttagagtaagtatgat 242  Q
    |||||||||||  || ||||||||||||||||||||| ||||||||||||    
T  45207422 ttagggttaagttatagcttgacctaattagcttttaaagtaagtatgat 45207373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 27175121 - 27175176
Alignment:
Q  192 attagggttaagcaattgcttgacctaattagcttttagagtaagtatgatatgat 247  Q
    ||||||||| |||||  |||||||||||| |||||| | |||||||||||||||||    
T  27175121 attagggtttagcaaaagcttgacctaataagctttcatagtaagtatgatatgat 27175176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 49130006 - 49130078
Alignment:
Q  169 ttaggagggaaattagcatagcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatga 241  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49130006 ttaggagggaaattagcatagtaattagggctaagcaattgcttgacctaattagcttttagagtaagtatga 49130078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 9070951 - 9070891
Alignment:
Q  188 agcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatgatatgata 248  Q
    |||||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||    
T  9070951 agcaattagggttaagcatttgcttgacctaattggcttttataataagtatgatatgata 9070891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 18140999 - 18141050
Alignment:
Q  188 agcaattagggttaagcaattgcttgacctaattagcttttagagtaagtat 239  Q
    |||||||||||||||||| ||||||||||||||| ||||||| | |||||||    
T  18140999 agcaattagggttaagcatttgcttgacctaattggcttttataataagtat 18141050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 42083444 - 42083394
Alignment:
Q  193 ttagggttaagcaattgcttgacctaattagcttttagagtaagtatgata 243  Q
    |||||||||||  || ||||||||||||||||||||| |||||||||||||    
T  42083444 ttagggttaagttatagcttgacctaattagcttttaaagtaagtatgata 42083394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 1136 - 1184
Alignment:
Q  194 tagggttaagcaattgcttgacctaattagcttttagagtaagtatgat 242  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  1136 tagggctaaacaattgctttacctaattagcttttagagtaagtatgat 1184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 4650119 - 4650167
Alignment:
Q  194 tagggttaagcaattgcttgacctaattagcttttagagtaagtatgat 242  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  4650119 tagggctaaacaattgctttacctaattagcttttagagtaagtatgat 4650167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 446014 - 446065
Alignment:
Q  192 attagggttaagcaattgcttgacctaattagcttttagagtaagtatgata 243  Q
    ||||||||||||||  |||||||| |||| |||||||| |||||||||||||    
T  446014 attagggttaagcatctgcttgacataataagcttttaaagtaagtatgata 446065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 22635983 - 22636039
Alignment:
Q  192 attagggttaagcaattgcttgacctaattagcttttagagtaagtatgatatgata 248  Q
    ||||||||| ||||   ||||| ||||||||||||||| ||||||||||||||||||    
T  22635983 attagggtttagcataagcttgccctaattagcttttaaagtaagtatgatatgata 22636039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 5336316 - 5336241
Alignment:
Q  163 atgtgattaggagggaaattagcatagcaattagggttaagcaattgcttgacctaattagcttttagagtaagta 238  Q
    ||||| || ||||||||| ||  | |||||||||||||||||| |||||||||||||||  |||||| | ||||||    
T  5336316 atgtgtttgggagggaaaatacaaaagcaattagggttaagcatttgcttgacctaattgacttttataataagta 5336241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 23890413 - 23890359
Alignment:
Q  188 agcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatgat 242  Q
    ||||||||||||| |||||  ||||||||| || |||||||| ||||||||||||    
T  23890413 agcaattagggtttagcaaaagcttgaccttataagcttttatagtaagtatgat 23890359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University