View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2558_low_9 (Length: 369)
Name: NF2558_low_9
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2558_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 31853574 - 31853945
Alignment:
| Q |
1 |
cacatgcttaacctgacgacttccacttttatatttttactgaaatattatgttttgaatgatctaagggctgctctattggctgcctcatgtgactaac |
100 |
Q |
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| T |
31853574 |
cacatgcttagctcgatgactttcatttttatatttttactgaaatattatgttttgaatgatctaagggctgctctattggctgtctcatgtgactaaa |
31853673 |
T |
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| Q |
101 |
ctaatatgtgcatggtataatcttcttataatcattgcctatatg----tgg----------gttataatagatcat-gatgttttagctttgattatat |
185 |
Q |
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| T |
31853674 |
ctaatatgtgcatggtataatcttcttataatcattgcctatatgatcatagctcatatattcttataatagatcatagatgttttagctttgattctat |
31853773 |
T |
|
| Q |
186 |
gcgcaatacaaatagtatttctctttgtaccaatttaatttaatttaataataaacatacaacatggattgttaggggattcttatttcttgctgctttt |
285 |
Q |
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| T |
31853774 |
gcgcaatacaaatagtatttctctttgtagcaatttaatttaatttaataataaacatacaacatggatggttagggga-------ttcttgctgctttt |
31853866 |
T |
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| Q |
286 |
gaaaagtcaatatcggcatacattc-tttaaccacaacagccaaacaaatgtaatgattaagaacaaagttcatctcac |
363 |
Q |
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| T |
31853867 |
gaaaagtcaatatcggcatatattcttttaatcacaacagccaaacaaatgtaatgattaagaacaaagttcatttcac |
31853945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 31851540 - 31851779
Alignment:
| Q |
17 |
cgacttccacttttatatttttactgaaatattatgttttgaatgatctaagggctgctctattggctgcctcatgtgactaacctaatatgtgcatggt |
116 |
Q |
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| T |
31851540 |
cgactaccacttttatatttttacaaaaatattgtgttttgaatgatctatgggctgctctagtggctgtctcatgtgactaaaccaatatatgcatggt |
31851639 |
T |
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| Q |
117 |
ataatcttcttataatcattgcctatatgtgggttataatagatcat-gatgttttagctttgattatatgcgcaatacaaatagtatttctctttgtac |
215 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31851640 |
ataatcttcttataatcattgcctatatgtggggtataatagatcatagatgttttagctttgattctatgcgcaatacaaatagtatttctctttgtac |
31851739 |
T |
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| Q |
216 |
caatttaatttaatttaataataaacatacaacatggattg |
256 |
Q |
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| T |
31851740 |
caa-ttaatttaatttaataagaaacatacatcatggattg |
31851779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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