View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2559_low_12 (Length: 342)
Name: NF2559_low_12
Description: NF2559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2559_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 29339481 - 29339735
Alignment:
| Q |
13 |
aatatgtcactatctaacctaagtgagatggatccataaatatactatactcctgccaaaataattaataacaaattgttgaaatgtgnnnnnnnnnnnn |
112 |
Q |
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| T |
29339481 |
aatatgtcaatatctaacctaagtgagatggatccataaatatactatactcctgccaaaataattaataacaaattgttgaaatgtgttttttttagtt |
29339580 |
T |
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| Q |
113 |
nnnnaaagtattatcttcacacaatcgcagagactaattcttcgtgtatggattatatggtacaaacttgacttaaacaaatcttgcaagcaaacaactt |
212 |
Q |
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| T |
29339581 |
ttttaaagtatcatcttcacacaatcacagagactaaatcttcgtgtatggattatatggtacaaacttgacttaaacaaatcttgcaaacaaacaactt |
29339680 |
T |
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| Q |
213 |
aaacaaatattaatgtaactaacatttatttcccaatcaaacatacggatcagattgaa |
271 |
Q |
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| T |
29339681 |
aaacaaatattaatg----taacatttatttcccaatcaaacatacggatcagattgaa |
29339735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 34899908 - 34899975
Alignment:
| Q |
269 |
gaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
336 |
Q |
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| T |
34899908 |
gaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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