View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2559_low_13 (Length: 310)
Name: NF2559_low_13
Description: NF2559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2559_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 29332571 - 29332808
Alignment:
| Q |
10 |
aagaatatacatgcatgttaatttgcactnnnnnnnntacaaagcaaaaatgatgcaatatatttataaaaaccttggaaacttgattgagaacttctga |
109 |
Q |
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| T |
29332571 |
aagaatatacatgcatgttaatttgcactaaaaaaaatacaaagcaaaaatgatgcaatatatttataaaaaccttggaaacttgattgagaacttctga |
29332670 |
T |
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| Q |
110 |
ttgattagaggaaccaaaagcattgatgactttcccaagaagaagtgtcatgagaggacttgcaaatccattagccatggcagaaatagtgccaatgatc |
209 |
Q |
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| T |
29332671 |
ttgattagaggaaccaaaagcattgatgactttcccaagaagaagtgtcatgagaggacttgcaaatccattagccatggcagaaatagtgccaatgatc |
29332770 |
T |
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| Q |
210 |
atcaacgttacgtcaagactatcagcaaaactaaagag |
247 |
Q |
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| T |
29332771 |
atcaaagttacgtcaagacgatcagcaaaactaaagag |
29332808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 5835170 - 5835328
Alignment:
| Q |
81 |
accttggaaacttgattgagaacttctgattgattagaggaaccaaaagcattgatgactttcccaagaagaagtgtcatgagaggacttgcaaatccat |
180 |
Q |
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| T |
5835170 |
accttagaaacttgtttgatagcgtctgctggattagaggaaccaaatgcattgatgacattcccaagaaagagagtcatgagagggcttgccaatccat |
5835269 |
T |
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| Q |
181 |
tagccatggcagaaatagtgccaatgatcatcaacgttacgtcaagactatcagcaaaa |
239 |
Q |
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| T |
5835270 |
tagccacagcagagatagtgccaatgatcatcaacgttacatcaagatgatcagcaaaa |
5835328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 5763434 - 5763364
Alignment:
| Q |
177 |
ccattagccatggcagaaatagtgccaatgatcatcaacgttacgtcaagactatcagcaaaactaaagag |
247 |
Q |
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| T |
5763434 |
ccattagcaacggcagagatggtgccaatgatcatcaatgttacatcaagactatcagcaaaagtaaagag |
5763364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 34899909 - 34899975
Alignment:
| Q |
238 |
aactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
304 |
Q |
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| T |
34899909 |
aactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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