View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2559_low_1_N (Length: 645)
Name: NF2559_low_1_N
Description: NF2559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2559_low_1_N |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 53 - 609
Target Start/End: Original strand, 6020866 - 6021425
Alignment:
| Q |
53 |
cctacacatgatcatgcagtgcaatggataagacaaatggagagaagattttgatatgggccccgcaaaaaacacaagagatagccaatattttgccatt |
152 |
Q |
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| T |
6020866 |
cctacacatgatgatgcagtgcaatggataagacaaatggagggaagattttgacatgggccccgcaaaaaacacaagagatagccaatattttgccatt |
6020965 |
T |
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| Q |
153 |
catttttctctctaaaacaatagaaaatgatcgtagtggggaggctatccaaagcaggtgccaagactaatgaataatttacacattcatgatttacaag |
252 |
Q |
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| T |
6020966 |
catttttctctctaaaacaatagaaaatgatcgtagtggggaggctatccaaagcaggtgccaagactaatggataatttacacattcatgatttacaag |
6021065 |
T |
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| Q |
253 |
acaaggacatagtaattaataacatgttatatttatgtgtaaacaaaatcattgtatattacactataatattaattatcatcgaaatgacttttttcgt |
352 |
Q |
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| T |
6021066 |
acaatgacatactaattaataacatgttatatttatgtgtaaacaaaatcgttgtatattacactataatattaattatcatcgaaatgacttttttcgt |
6021165 |
T |
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| Q |
353 |
tgaatgtgatgaatgatcatggaacaaaaacaagaggcttgattccgttaaaatagaaaagaataggaggcttaatcatatagtattaatatatgtgaaa |
452 |
Q |
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| T |
6021166 |
tgaatgtgatgaatgatcatggaacaaaaacaagaggcttgattccgttaaaatagaaaagaataggaggcttaatcatatagtattaatatatgtgaaa |
6021265 |
T |
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| Q |
453 |
ctttgaaaagttcatacctcatggtaaatttagccaacacaagaaggtgctgatgaattacatttccatttataatctcgtattctgactttcataacaa |
552 |
Q |
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| T |
6021266 |
ctttgaaaagttcatacctcatggtaaatttagccaacacaagaaggtgctaatgaattacatttccatttataatctcgtattctgactttcataacaa |
6021365 |
T |
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| Q |
553 |
agacatttttcaaagaagacttttataataaagcatat---tacttactatctttttgac |
609 |
Q |
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| T |
6021366 |
agacatttttcaaagaagacttttataataaagcatattactacttactatctttttgac |
6021425 |
T |
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