View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2559_low_2_N (Length: 515)
Name: NF2559_low_2_N
Description: NF2559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2559_low_2_N |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 41 - 507
Target Start/End: Original strand, 37375078 - 37375531
Alignment:
| Q |
41 |
tatttatttatgtattataaattcacaagtatgtcagtagattaactcaaataagcaactttaaaataagcaaattcagagagacaatctaaaacaaaag |
140 |
Q |
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| T |
37375078 |
tatttatttatgtattataaattcacaagtatgtcagtagattaactcaaataagcaactttaaaataagcaaattcagagagacaatctaaaacaaaag |
37375177 |
T |
|
| Q |
141 |
ttcttattgaccttttcttgtgatatactagggtgctgcttatcaagaacttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgt |
240 |
Q |
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| T |
37375178 |
ttcttattgaccttttcttgtgatatactagggtgctgcttatcaagaacttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgt |
37375277 |
T |
|
| Q |
241 |
tcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttg |
340 |
Q |
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| T |
37375278 |
tcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttg |
37375377 |
T |
|
| Q |
341 |
atcttggtactggcactactaacttactgtctcaacatttttatcatatcattgacaacaatcatgatgattttaaatctacaaagtattgattgattat |
440 |
Q |
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| T |
37375378 |
atcttggtactggcactactaacttactgtctcaacatttttatcat-------------atcatgatgattttaaatctacaaagtattgattgattat |
37375464 |
T |
|
| Q |
441 |
acattcatgtattaatttaaatttgcatcgtcatgtacaagaatatatagacagttctgcctatgct |
507 |
Q |
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| T |
37375465 |
acattcatgtattaatttaaatttgcattatcatgtacaagaatatatagacagttctgcctatgct |
37375531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 29 - 507
Target Start/End: Original strand, 37382401 - 37382881
Alignment:
| Q |
29 |
aactttatcatctatttatttatgtattataaattcacaagtatgtcagtagattaactcaaataagcaactttaaaataagcaaattcagagagaca-- |
126 |
Q |
| |
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||||||||| || ||||| || ||||||||||||||||| |||||| ||| ||| ||||||||||||| | || ||||||||| |||||| ||||||| |
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| T |
37382401 |
aactttatcttcaatttaattctgtattataaattcacatgtatgtaagtggataaactcaaataagcgaattcaaaataagccaattcaaagagacacg |
37382500 |
T |
|
| Q |
127 |
--atctaaaacaaaagttcttattgaccttttcttgtgatatactagggtgctgcttatcaagaacttggtcgagtatggtatgcaaaagacatagcaat |
224 |
Q |
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| ||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37382501 |
taacctaaaacaaaagttcttattgaccttttcacgtgatttcctagggtgctgcttatcaagaatctggtcgagtatggtatgcaaaagacatagcaat |
37382600 |
T |
|
| Q |
225 |
ccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagcttttttgagatctcttcatgagcagtat |
324 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||||| |
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| T |
37382601 |
ccaagaaaggcgttgtgcatggatgtctaatggtttcatgagtgtaaatacaaagttaggagcaggaagagcttttttgagatctctttatgcacagtat |
37382700 |
T |
|
| Q |
325 |
gctgcttggggtgttgatcttggtactggcactactaacttactgtctcaacatttttatcatatcattgacaacaatcatgatgattttaaatctacaa |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
37382701 |
gctgcttggggtgttgatcttggtactggcactactaacttactgtcacaacatttttatcatatcattgacaacaatcatgatgattttgaatttacaa |
37382800 |
T |
|
| Q |
425 |
agtattgattgattatacattcatgtattaatttaaatttgcatcgtcatgtacaagaatatatagacagttctgcctatgct |
507 |
Q |
| |
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| |||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||| |||||| |||||||||| |
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| T |
37382801 |
actattgattgattatacattcatgtattaatttggaattgcattatcatgtacaaga--atatacacagttttgcctatgct |
37382881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 143 - 430
Target Start/End: Original strand, 37360363 - 37360650
Alignment:
| Q |
143 |
cttattgaccttttcttgtgatatactagggtgctgcttatcaagaacttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttc |
242 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
37360363 |
cttattgaccttttcttgcgatatcacagggtgctgcttatcaagaatctggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtgg |
37360462 |
T |
|
| Q |
243 |
atggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgat |
342 |
Q |
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||||||| | ||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37360463 |
atggatgacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgat |
37360562 |
T |
|
| Q |
343 |
cttggtactggcactactaacttactgtctcaacatttttatcatatcattgacaacaatcatgatgattttaaatctacaaagtatt |
430 |
Q |
| |
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||||||||| |||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| |
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| T |
37360563 |
cttggtactcgcacaactaactaactgtctcaacatttttatcatgttattgacaacaatcatgatgatttgaaatctacaaagtatt |
37360650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 143 - 430
Target Start/End: Complemental strand, 37367699 - 37367412
Alignment:
| Q |
143 |
cttattgaccttttcttgtgatatactagggtgctgcttatcaagaacttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttc |
242 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
37367699 |
cttattgaccttttcttgcgatatcacagggtgctgcttatcaagaatcaggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtgg |
37367600 |
T |
|
| Q |
243 |
atggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgat |
342 |
Q |
| |
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||||||| | ||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37367599 |
atggatgacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgat |
37367500 |
T |
|
| Q |
343 |
cttggtactggcactactaacttactgtctcaacatttttatcatatcattgacaacaatcatgatgattttaaatctacaaagtatt |
430 |
Q |
| |
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||||||||| |||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |||||||| |
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| T |
37367499 |
cttggtactcgcacaactaactaactgtctcaacatttttatcatgttattgacaacaatcatgatgatttgaaatctaaaaagtatt |
37367412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 238 - 350
Target Start/End: Complemental strand, 37386455 - 37386342
Alignment:
| Q |
238 |
tgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgctt-ggggt |
336 |
Q |
| |
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|||||||||||| || ||||||||||| |||||| ||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |
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| T |
37386455 |
tgttcatggatgcaaaacggtttcatgagagtaaatgcaacgttaggtgcagggagagcttttttgagatccctttatgagcagtatgctgcttgggggt |
37386356 |
T |
|
| Q |
337 |
gttgatcttggtac |
350 |
Q |
| |
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|||||||||||||| |
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| T |
37386355 |
gttgatcttggtac |
37386342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 37360258 - 37360339
Alignment:
| Q |
45 |
tatttatgtattataaattcacaagtatgtcagtagattaactcaaataagcaactttaaaataagcaaattcagagagaca |
126 |
Q |
| |
|
|||||||| |||||| |||||||||||| ||||||||| ||||| ||||||||| || |||||||| |||||| ||||||| |
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| T |
37360258 |
tatttatgcattatacattcacaagtatatcagtagataaactcgaataagcaatttcaaaataaggcaattcaaagagaca |
37360339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 166 - 350
Target Start/End: Complemental strand, 41230039 - 41229855
Alignment:
| Q |
166 |
tactagggtgctgcttatcaagaacttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatga |
265 |
Q |
| |
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|||||||| | ||||||||||||| |||||| || ||| ||||||||||||||||||||| | |||| |||| ||||||| ||||||||||||| |
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| T |
41230039 |
tactagggcggtgcttatcaagaatctggtcgtgtgtggcatgcaaaagacatagcaatcccaaaaagagcttgtggatggatgcagaatggtttcatga |
41229940 |
T |
|
| Q |
266 |
gtgtaaatacaaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtac |
350 |
Q |
| |
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||||| |||||| ||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41229939 |
gtgtagatacaacattaggggcagggagagcgtttttgagatccctttatgagcagtatgctgcttggggtgttgatcttggtac |
41229855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 458
Target Start/End: Complemental strand, 41229754 - 41229716
Alignment:
| Q |
420 |
tacaaagtattgattgattatacattcatgtattaattt |
458 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| |
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| T |
41229754 |
tacaaagtattgattgattatacattcatgtgttaattt |
41229716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 351
Target Start/End: Original strand, 39243773 - 39243922
Alignment:
| Q |
202 |
tggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagcttttt |
301 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||| |||||| || |||||||||||||||||||||| | ||| || || || | ||| |||| |
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| T |
39243773 |
tggtatgcaaaagacatagggatccctgaaagggcttgtggctggatgactcatggtttcatgagtgtaaatactacgttgggtgctggcaaagcctttt |
39243872 |
T |
|
| Q |
302 |
tgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtact |
351 |
Q |
| |
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|||| || ||| ||| ||||||||||| |||||||||||| |||||||| |
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| T |
39243873 |
tgaggtccctttatgtgcagtatgctgaatggggtgttgattttggtact |
39243922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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