View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2559_low_3 (Length: 410)

Name: NF2559_low_3
Description: NF2559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2559_low_3
NF2559_low_3
[»] scaffold0091 (4 HSPs)
scaffold0091 (287-401)||(29057-29172)
scaffold0091 (139-224)||(28907-28994)
scaffold0091 (139-211)||(24710-24782)
scaffold0091 (19-63)||(28787-28831)
[»] scaffold0218 (3 HSPs)
scaffold0218 (288-401)||(14378-14492)
scaffold0218 (139-219)||(14227-14307)
scaffold0218 (19-63)||(14107-14151)
[»] chr3 (12 HSPs)
chr3 (294-401)||(16642304-16642412)
chr3 (289-401)||(4712800-4712913)
chr3 (287-401)||(14062778-14062893)
chr3 (294-401)||(14055037-14055145)
chr3 (139-211)||(16642123-16642195)
chr3 (139-211)||(4712997-4713069)
chr3 (294-390)||(13926860-13926957)
chr3 (145-211)||(14062983-14063049)
chr3 (139-211)||(14055222-14055294)
chr3 (21-63)||(14055370-14055412)
chr3 (139-190)||(14481800-14481851)
chr3 (19-47)||(14481944-14481972)
[»] chr6 (5 HSPs)
chr6 (287-401)||(14989375-14989490)
chr6 (289-401)||(14980263-14980376)
chr6 (139-211)||(14980460-14980532)
chr6 (19-63)||(14980608-14980652)
chr6 (287-324)||(10906902-10906939)
[»] chr1 (7 HSPs)
chr1 (287-401)||(51658662-51658777)
chr1 (287-390)||(13882248-13882351)
chr1 (139-211)||(13882464-13882536)
chr1 (139-210)||(51658854-51658925)
chr1 (302-370)||(1567097-1567166)
chr1 (19-59)||(51659005-51659045)
chr1 (19-63)||(13882612-13882656)
[»] chr7 (12 HSPs)
chr7 (287-401)||(48376787-48376902)
chr7 (139-224)||(16060364-16060449)
chr7 (287-401)||(16060512-16060627)
chr7 (139-211)||(9080196-9080268)
chr7 (139-204)||(48376627-48376692)
chr7 (287-390)||(4531761-4531865)
chr7 (139-206)||(16069010-16069077)
chr7 (287-324)||(9080338-9080375)
chr7 (19-63)||(9080076-9080120)
chr7 (302-348)||(37945878-37945924)
chr7 (165-206)||(41744134-41744175)
chr7 (19-63)||(16060244-16060288)
[»] scaffold0063 (3 HSPs)
scaffold0063 (139-224)||(28443-28528)
scaffold0063 (287-325)||(28342-28380)
scaffold0063 (19-63)||(28604-28648)
[»] chr8 (9 HSPs)
chr8 (287-401)||(23658526-23658649)
chr8 (139-208)||(23657638-23657707)
chr8 (139-208)||(23658413-23658482)
chr8 (287-350)||(23657751-23657814)
chr8 (342-401)||(23657824-23657884)
chr8 (139-206)||(17862246-17862313)
chr8 (19-63)||(23657518-23657562)
chr8 (19-63)||(23658308-23658352)
chr8 (357-390)||(29293929-29293962)
[»] scaffold1269 (1 HSPs)
scaffold1269 (310-401)||(1-93)
[»] scaffold0003 (3 HSPs)
scaffold0003 (139-211)||(130623-130695)
scaffold0003 (287-362)||(130795-130870)
scaffold0003 (19-63)||(130518-130562)
[»] scaffold0061 (2 HSPs)
scaffold0061 (139-211)||(18099-18171)
scaffold0061 (19-63)||(18247-18291)
[»] chr2 (3 HSPs)
chr2 (302-390)||(23656472-23656561)
chr2 (307-390)||(44586472-44586556)
chr2 (19-63)||(23907656-23907700)
[»] scaffold0319 (1 HSPs)
scaffold0319 (333-401)||(13570-13639)
[»] scaffold1043 (2 HSPs)
scaffold1043 (139-206)||(1427-1494)
scaffold1043 (19-63)||(1559-1603)
[»] chr4 (5 HSPs)
chr4 (139-206)||(19728447-19728514)
chr4 (308-378)||(3576240-3576311)
chr4 (338-390)||(18231489-18231542)
chr4 (19-63)||(17418490-17418534)
chr4 (19-63)||(19728579-19728623)
[»] chr5 (3 HSPs)
chr5 (144-206)||(25756783-25756845)
chr5 (144-206)||(25790956-25791018)
chr5 (139-196)||(24832209-24832266)
[»] scaffold0010 (1 HSPs)
scaffold0010 (19-63)||(142123-142167)
[»] scaffold0239 (1 HSPs)
scaffold0239 (19-63)||(21484-21528)
[»] scaffold0170 (1 HSPs)
scaffold0170 (19-63)||(17118-17162)


Alignment Details
Target: scaffold0091 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 287 - 401
Target Start/End: Original strand, 29057 - 29172
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 386  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 29156  T
Q  387 cctc-ttattcatctc 401  Q
    |||| |||||||||||    
T  29157 cctcattattcatctc 29172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 28907 - 28994
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  28907 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatatttacacaccaccc 28994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 24710 - 24782
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24710 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 24782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 28787 - 28831
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||||||||||||||||||  | |||||||||||||    
T  28787 acatcatcaacaaatcagaatcataaattcggactcttcctatta 28831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 288 - 401
Target Start/End: Original strand, 14378 - 14492
Alignment:
Q  288 tcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggattc 387  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 14477  T
Q  388 ctc-ttattcatctc 401  Q
    ||| |||||||||||    
T  14478 ctcattattcatctc 14492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 14227 - 14307
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacac 219  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  14227 atgtatattagacaccatcatataagtcatcatcataattatacgtcatcattgtcatagtcaatatatatatatacacac 14307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 14107 - 14151
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||||| ||||||||||||  | |||||||||||||    
T  14107 acatcatcaacaaattagaatcataaattcggactcttcctatta 14151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 294 - 401
Target Start/End: Original strand, 16642304 - 16642412
Alignment:
Q  294 tcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggattcctc-tt 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  16642304 tcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcctcatt 16642403  T
Q  393 attcatctc 401  Q
    |||||||||    
T  16642404 attcatctc 16642412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 289 - 401
Target Start/End: Complemental strand, 4712913 - 4712800
Alignment:
Q  289 catcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggattcc 388  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 4712814  T
Q  389 tc-ttattcatctc 401  Q
    || |||||||||||    
T  4712813 tcattattcatctc 4712800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 287 - 401
Target Start/End: Complemental strand, 14062893 - 14062778
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 386  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaat 14062794  T
Q  387 cctc-ttattcatctc 401  Q
    |||| |||||||||||    
T  14062793 cctcattattcatctc 14062778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 294 - 401
Target Start/End: Complemental strand, 14055145 - 14055037
Alignment:
Q  294 tcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggattcctc-tt 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| || ||||| ||    
T  14055145 tcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcgcattatagaatcctcatt 14055046  T
Q  393 attcatctc 401  Q
    |||||||||    
T  14055045 attcatctc 14055037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 16642123 - 16642195
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642123 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 16642195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 4713069 - 4712997
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 211  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4713069 atgtatattagacaccatcattcaagttatcatcataattatacgtcgtcattctcatagtcaatatatatat 4712997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 294 - 390
Target Start/End: Complemental strand, 13926957 - 13926860
Alignment:
Q  294 tcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgttacattatggattcctc 390  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||  | ||||||||||||| | ||||||||||||||||    
T  13926957 tcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatcaattgtcatcactcttcatcacattatggattcctc 13926860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 14063049 - 14062983
Alignment:
Q  145 attagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 211  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  14063049 attagacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 14062983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 14055294 - 14055222
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 211  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  14055294 atgtatattagacatcatcattcaagtcatcatcataattatacgtcatcattatcatcgtcaatatatatat 14055222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 14055412 - 14055370
Alignment:
Q  21 atcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  14055412 atcatcaacaaataagaatcataaatgtggactcttcctatta 14055370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 14481851 - 14481800
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcat 190  Q
    |||||||||||  | |||||||||| |||||||||||||||||| |||||||    
T  14481851 atgtatattaggaatcatcattcaaatcatcatcataattatacatcgtcat 14481800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 14481972 - 14481944
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatg 47  Q
    |||||||||||||||||||||||||||||    
T  14481972 acatcatcaacaaatcagaatcataaatg 14481944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 287 - 401
Target Start/End: Complemental strand, 14989490 - 14989375
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 386  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 14989391  T
Q  387 cctc-ttattcatctc 401  Q
    | || |||||||||||    
T  14989390 cgtcattattcatctc 14989375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 289 - 401
Target Start/End: Complemental strand, 14980376 - 14980263
Alignment:
Q  289 catcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggattcc 388  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 14980277  T
Q  389 tc-ttattcatctc 401  Q
    || |||||||||||    
T  14980276 tcattattcatctc 14980263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 14980532 - 14980460
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14980532 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 14980460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 14980652 - 14980608
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||||||||||||||||||  | |||||||||||||    
T  14980652 acatcatcaacaaatcagaatcataaattcggactcttcctatta 14980608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcat 324  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 287 - 401
Target Start/End: Complemental strand, 51658777 - 51658662
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 386  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 51658678  T
Q  387 cctc-ttattcatctc 401  Q
    |||| |||||||||||    
T  51658677 cctcattattcatctc 51658662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 287 - 390
Target Start/End: Complemental strand, 13882351 - 13882248
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 386  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacaatatggatt 13882252  T
Q  387 cctc 390  Q
    ||||    
T  13882251 cctc 13882248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 13882536 - 13882464
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13882536 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcattgtctatatatatat 13882464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 51658925 - 51658854
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatata 210  Q
    |||||||||||| | |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  51658925 atgtatattagatatcatcgttcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatata 51658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 1567166 - 1567097
Alignment:
Q  302 atataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactctt 370  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||||||||||||  ||||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctt 1567097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 51659045 - 51659005
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcct 59  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  51659045 acatcatcaacaaatcagaatcataaatgcgaactcttcct 51659005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 13882656 - 13882612
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||||||||||||||||||  | |||||| ||||||    
T  13882656 acatcatcaacaaatcagaatcataaattcggactctttctatta 13882612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 287 - 401
Target Start/End: Original strand, 48376787 - 48376902
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 386  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatagatt 48376886  T
Q  387 cctc-ttattcatctc 401  Q
    |||| |||||||||||    
T  48376887 cctcattattcatctc 48376902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 16060364 - 16060449
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16060364 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 16060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 287 - 401
Target Start/End: Original strand, 16060512 - 16060627
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 386  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | ||||||| ||||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatcactcctcatcacattatagatt 16060611  T
Q  387 cctc-ttattcatctc 401  Q
    |||| |||||||||||    
T  16060612 cctcattattcatctc 16060627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 9080196 - 9080268
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  9080196 atgtatattagacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 9080268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 48376627 - 48376692
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaata 204  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  48376627 atgtatattagacaccatcatttaagtcatcatcataattatacgtcatcattctcatagtcaata 48376692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 287 - 390
Target Start/End: Complemental strand, 4531865 - 4531761
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgttacattatggat 385  Q
    |||||| ||| ||| |||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||  | ||||||||||||||| |||||||||||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatcaattgtcatcactcttcgtcacattatggat 4531766  T
Q  386 tcctc 390  Q
    |||||    
T  4531765 tcctc 4531761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 16069077 - 16069010
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 206  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  16069077 atgtatattagacatcatcattcaaatcatcatcataattatacgtcatcattctcatcgtcaatata 16069010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcat 324  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 9080076 - 9080120
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    |||||||||||||||||||||||||||||   |||||||||||||    
T  9080076 acatcatcaacaaatcagaatcataaatgcagactcttcctatta 9080120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 37945924 - 37945878
Alignment:
Q  302 atataaacattatcatttctcatcgtatttatttaattacatatata 348  Q
    ||||||||||  |||||||| |||||||||||||| |||||||||||    
T  37945924 atataaacatcgtcatttcttatcgtatttatttatttacatatata 37945878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 41744134 - 41744175
Alignment:
Q  165 tcatcatcataattatacgtcgtcattctcatagtcaatata 206  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  41744134 tcatcatcataattagacgtcgtcattctcatcatcaatata 41744175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 16060244 - 16060288
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    |||| |||||||||||||||||||||||  | |||||||||||||    
T  16060244 acatgatcaacaaatcagaatcataaattcggactcttcctatta 16060288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 28528 - 28443
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 224  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28528 atgtatattagacaccatcattcaattcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 28443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 325
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcatc 325  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 28648 - 28604
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||||||||||||||||||    |||||||||||||    
T  28648 acatcatcaacaaatcagaatcataaattcagactcttcctatta 28604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 287 - 401
Target Start/End: Original strand, 23658526 - 23658649
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattaca--------tatatataatatcttcgtcatcactcttcgttacat 378  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| ||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatcactcttcgtcacat 23658625  T
Q  379 tatggattcctc-ttattcatctc 401  Q
    |||||||||||| |||||||||||    
T  23658626 tatggattcctcattattcatctc 23658649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 23657638 - 23657707
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatata 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23657638 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtctatatata 23657707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 23658413 - 23658482
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatata 208  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  23658413 atgtatattagacaccatcattcaagtcatcatcataattataagtcgtcattctcatagtctatatata 23658482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 23657751 - 23657814
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 350  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatata 23657814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 23657824 - 23657884
Alignment:
Q  342 atatatataatatcttcgtcatcactcttcgttacattatggattcctc-ttattcatctc 401  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  23657824 atatatataatatcttcgtcatcactcttcgtcacattatggattcctcattattcatctc 23657884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 17862313 - 17862246
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 206  Q
    |||||||||||||| |||||||||| |||||||||||||||||| |  |||||||||| |||||||||    
T  17862313 atgtatattagacatcatcattcaaatcatcatcataattataccttatcattctcatcgtcaatata 17862246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 23657518 - 23657562
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||||||||||||||||||  | |||||||||||||    
T  23657518 acatcatcaacaaatcagaatcataaattcggactcttcctatta 23657562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 23658308 - 23658352
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||||||||||||||||||  | |||||||||||||    
T  23658308 acatcatcaacaaatcagaatcataaattcggactcttcctatta 23658352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 390
Target Start/End: Original strand, 29293929 - 29293962
Alignment:
Q  357 tcgtcatcactcttcgttacattatggattcctc 390  Q
    ||||||||||||||||| ||||||||||||||||    
T  29293929 tcgtcatcactcttcgtcacattatggattcctc 29293962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 310 - 401
Target Start/End: Original strand, 1 - 93
Alignment:
Q  310 attatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggattcctc-ttattcatctc 401  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaatcctcattattcatctc 93  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 130623 - 130695
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130623 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 130695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 287 - 362
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  287 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 130518 - 130562
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||||||||||||||||||    |||||||||||||    
T  130518 acatcatcaacaaatcagaatcataaattcagactcttcctatta 130562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 18171 - 18099
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 211  Q
    |||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  18171 atgtatattagataccatcattcaagtcatcatcataatcatacttcgtcattctcatagtcaatatatatat 18099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 18291 - 18247
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||||||||||||||||||  | |||||||||||||    
T  18291 acatcatcaacaaatcagaatcataaattcggactcttcctatta 18247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 302 - 390
Target Start/End: Complemental strand, 23656561 - 23656472
Alignment:
Q  302 atataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgttacattatggattcctc 390  Q
    ||||||| ||||||||||||||| ||||||||||| || |||||||||||||||  ||||||||||||||||| ||||||||||||||||    
T  23656561 atataaatattatcatttctcattgtatttatttactttcatatatataatatcaatcgtcatcactcttcgtcacattatggattcctc 23656472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 44586556 - 44586472
Alignment:
Q  307 aacattatcatttctcatcgtatttatttaattacatatatataata-tcttcgtcatcactcttcgttacattatggattcctc 390  Q
    ||||| ||||||||  |||||| | ||||  |||||||||||||||| |  |||||||||||||| |||||| ||||||||||||    
T  44586556 aacatcatcatttcatatcgtagtaatttctttacatatatataatactaatcgtcatcactctttgttacagtatggattcctc 44586472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 23907656 - 23907700
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||||||| |||||||||||   |||||||||||||    
T  23907656 acatcatcaacaaatcaaaatcataaatgcagactcttcctatta 23907700  T

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Target: scaffold0319 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 401
Target Start/End: Complemental strand, 13639 - 13570
Alignment:
Q  333 tttaattacatatatataatatcttcgtcatcactcttcgttacattatggattcctc-ttattcatctc 401  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||    
T  13639 tttaattacatatatataatatcttcgtcatcactctttgtcacatcatggattcctcattattcatctc 13570  T

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Target: scaffold1043 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 1494 - 1427
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 206  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||  |||||||||| |||||||||    
T  1494 atgtatattagacatcatcattcaaatcatcatcataattatacgttatcattctcatcgtcaatata 1427  T

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Target: scaffold1043; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 1603 - 1559
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||    
T  1603 acatcatcaacaaatcagaatcataaatgtagactcctcctatta 1559  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 19728514 - 19728447
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 206  Q
    |||||||||||||| |||||||||| |||||||||||||||||| |  |||||||||| || ||||||    
T  19728514 atgtatattagacatcatcattcaaatcatcatcataattatactttatcattctcatcgttaatata 19728447  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 378
Target Start/End: Complemental strand, 3576311 - 3576240
Alignment:
Q  308 acattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgttacat 378  Q
    |||| ||||| ||||||||||||||||||  ||||| ||||||| |||  ||||||||||||||||| ||||    
T  3576311 acatcatcatctctcatcgtatttatttatatacatttatataaaatcaatcgtcatcactcttcgtcacat 3576240  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 18231542 - 18231489
Alignment:
Q  338 ttacatatatataatatct-tcgtcatcactcttcgttacattatggattcctc 390  Q
    |||||||||||||||||   |||||||||||||| |||||| ||||||||||||    
T  18231542 ttacatatatataatattaatcgtcatcactctttgttacagtatggattcctc 18231489  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 17418490 - 17418534
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    |||||| ||||||||||||||||||||||   |||||||||||||    
T  17418490 acatcaccaacaaatcagaatcataaatgcagactcttcctatta 17418534  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 19728623 - 19728579
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||| ||||||||||||||||||||||||  |||| ||||||||    
T  19728623 acatcctcaacaaatcagaatcataaatgtagactcctcctatta 19728579  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 25756845 - 25756783
Alignment:
Q  144 tattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 206  Q
    |||| |||| |||||||||| ||||||||||||||||| ||| |||||||||| |||||||||    
T  25756845 tatttgacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25756783  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 25790956 - 25791018
Alignment:
Q  144 tattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 206  Q
    |||| |||| |||||||||| ||||||||||||||||| ||| |||||||||| |||||||||    
T  25790956 tattcgacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25791018  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 24832266 - 24832209
Alignment:
Q  139 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcat 196  Q
    |||||||||||  | |||||||||| |||||||||||||||||| || ||||||||||    
T  24832266 atgtatattaggaatcatcattcaaatcatcatcataattatacatcatcattctcat 24832209  T

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Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 142123 - 142167
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||    
T  142123 acatcatcaacaaatcagaatcataaatgtagactcctcctatta 142167  T

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Target: scaffold0239 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 21528 - 21484
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||| ||||||||||||||||||||  | |||||||||||||    
T  21528 acatcataaacaaatcagaatcataaattcggactcttcctatta 21484  T

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Target: scaffold0170 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 17118 - 17162
Alignment:
Q  19 acatcatcaacaaatcagaatcataaatgtgcactcttcctatta 63  Q
    ||||||||||||||||||||||||| |||   |||||||||||||    
T  17118 acatcatcaacaaatcagaatcatagatgcagactcttcctatta 17162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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