View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2559_low_4 (Length: 388)
Name: NF2559_low_4
Description: NF2559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2559_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 108 - 359
Target Start/End: Original strand, 48835379 - 48835630
Alignment:
| Q |
108 |
atcagatgcaaaaataacaattgggcttgccccaggtgaacttgcatttgttaatccaaacnnnnnnnctgctgttggtaatgaagttggataccgtttg |
207 |
Q |
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| T |
48835379 |
atcagatgcaaaaataacaattgggcttgccccaggtgaacttgcatttgttaatccaaacaaaaaaactgttgttggtaatgaagttggataccgtttg |
48835478 |
T |
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| Q |
208 |
attccagcaattccaactcattcacttttaactgaagatgattatccacaaatacgtggtgcatttactaattataatgtttgggtcacaccttataata |
307 |
Q |
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| T |
48835479 |
attccagcaattccagctcatccacttttaactgaagatgattatccacaaatacgtggtgcatttactaattataatgtttgggtcgcaccttataata |
48835578 |
T |
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| Q |
308 |
gaactgaaaaatgggctggtggactttatattgatcatagccgtggagatga |
359 |
Q |
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| T |
48835579 |
gaactgaaaaatgggctggtggactttatgttgatcatagccgtggagatga |
48835630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 108 - 356
Target Start/End: Complemental strand, 48814963 - 48814715
Alignment:
| Q |
108 |
atcagatgcaaaaataacaattgggcttgccccaggtgaacttgcatttgttaatccaaacnnnnnnnctgctgttggtaatgaagttggataccgtttg |
207 |
Q |
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| T |
48814963 |
atcagatgcaaaaattactctagggcttgccccaggtgaacttgcaattgtcaatccaaacaaaaaaactatcgttggaaacgacgtcggataccgtttg |
48814864 |
T |
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| Q |
208 |
attccagcaattccaactcattcacttttaactgaagatgattatccacaaatacgtggtgcatttactaattataatgtttgggtcacaccttataata |
307 |
Q |
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| T |
48814863 |
atcccagcaattccagctcatccacttctaaccgaagatgattatccacaaatacgtggtgcatttactaattataatgtttgggtcacaccttataata |
48814764 |
T |
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| Q |
308 |
gaactgaaaaatgggctggtggactttatattgatcatagccgtggaga |
356 |
Q |
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| T |
48814763 |
gaactgaaaaatgggctggtggactatatgttgatcatagccgtggaga |
48814715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 196 - 359
Target Start/End: Complemental strand, 15824475 - 15824312
Alignment:
| Q |
196 |
ggataccgtttgattccagcaattccaactcattcacttttaactgaagatgattatccacaaatacgtggtgcatttactaattataatgtttgggtca |
295 |
Q |
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| T |
15824475 |
ggataccgtttgattccagcaattcctgctcattcacttctaactgaagatgattatccgcaaatacgcggtgcatttaccaattataatgtttgggtca |
15824376 |
T |
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| Q |
296 |
caccttataatagaactgaaaaatgggctggtggactttatattgatcatagccgtggagatga |
359 |
Q |
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| T |
15824375 |
caccttataatagaactgaaaaatgggctggtggactctatgttgatcatagtcgtggagatga |
15824312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 196 - 359
Target Start/End: Complemental strand, 48788440 - 48788277
Alignment:
| Q |
196 |
ggataccgtttgattccagcaattccaactcattcacttttaactgaagatgattatccacaaatacgtggtgcatttactaattataatgtttgggtca |
295 |
Q |
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||||||||||||||||| ||||||||| ||||| ||||| |||| ||||||||||| ||||||||||||||||| || |||||||||||||||||| ||| |
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| T |
48788440 |
ggataccgtttgattccggcaattccagctcatccacttctaaccgaagatgattacccacaaatacgtggtgctttcactaattataatgtttggatca |
48788341 |
T |
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| Q |
296 |
caccttataatagaactgaaaaatgggctggtggactttatattgatcatagccgtggagatga |
359 |
Q |
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| T |
48788340 |
caccttataatagaactgaaaaatgggctggtggactttatgttgatcatagtcgtggagatga |
48788277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 48797962 - 48797922
Alignment:
| Q |
113 |
atgcaaaaataacaattgggcttgccccaggtgaacttgca |
153 |
Q |
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|||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
48797962 |
atgcaaaaatcacaattgagcttggcccaggtgaacttgca |
48797922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 34899975 - 34899896
Alignment:
| Q |
30 |
atctcaacttgaaagttgaaactaccgaactttacctatatgcatataaacacatctctctttagttcttctctcgctat |
109 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctat |
34899896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 347
Target Start/End: Complemental strand, 47103766 - 47103663
Alignment:
| Q |
244 |
gatgattatccacaaatacgtggtgcatttactaattataatgtttgggtcacaccttataatagaactgaaaaatgggctggtggactttatattgatc |
343 |
Q |
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||||||||||||||||| | ||||| || |||||||||||||| ||||||||||| || || | |||||| |||||||| || ||| | ||| |||||| |
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| T |
47103766 |
gatgattatccacaaattagaggtgctttcactaattataatgtgtgggtcacaccatacaacaaaactgagaaatgggcaggaggattatatgttgatc |
47103667 |
T |
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| Q |
344 |
atag |
347 |
Q |
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|||| |
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| T |
47103666 |
atag |
47103663 |
T |
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