View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2559_low_5 (Length: 366)

Name: NF2559_low_5
Description: NF2559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2559_low_5
NF2559_low_5
[»] chr2 (3 HSPs)
chr2 (158-254)||(40618155-40618251)
chr2 (2-73)||(40618000-40618071)
chr2 (269-353)||(40618274-40618350)


Alignment Details
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 40618155 - 40618251
Alignment:
Q  158 ggttcgttgatattttaaaatcatttatagtttgagacaatattcttatgtaaagtgagtacaattcgagacagagaagtattatcattatccactc 254  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||  ||||||||||||    
T  40618155 ggttcgttgatattttaaaatcatctatagtttgagacaatatttttatgtaaagtgagtacaattcgggacagaggagtattgacattatccactc 40618251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 40618000 - 40618071
Alignment:
Q  2 atatttttggcatgtcatacaagagaaatatacttagttttagatgggaaagataaattatgaattatttta 73  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  40618000 atatttttggcatgtcatacaagagaaatatacttaattttagatgggaaagataaattatgaattgtttta 40618071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 269 - 353
Target Start/End: Original strand, 40618274 - 40618350
Alignment:
Q  269 aggtaatcttattttttggttgagccgagtattccttgcacttcatccaattttaaggttcaaatattagttgcgcttttctcct 353  Q
    |||||||||| |||||||||||||||        |||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  40618274 aggtaatcttgttttttggttgagcc--------cttgcacttcttccaattttaaggttcaaatattagttgtgcttttctcct 40618350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University