View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2559_low_6 (Length: 361)
Name: NF2559_low_6
Description: NF2559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2559_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 31275331 - 31275088
Alignment:
| Q |
21 |
ttttttgtgtgtgtaagacgggtatcctccattcgcaactacatagattaattcctcgagtattgtggaactcaaataattggtaagctcttcctataga |
120 |
Q |
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| T |
31275331 |
ttttttttgtgtgtaagacgggtatcctccatgcgcaactacatagactaatttttcgatcattgtggaacccaaatgattgataagctcttcctataga |
31275232 |
T |
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| Q |
121 |
ttttaacacttctgcatgcccaaggttggaacccaagaacatgcacnnnnnnnnnatcatatgatgagagtatttttaagtcaactcttttccaaaactt |
220 |
Q |
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| T |
31275231 |
ttttaacgctgctgcatgcccagg-------------aacatgcactttttttttatcatatggtgagagtatttttaagtgaactcttttcaaaaactt |
31275145 |
T |
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| Q |
221 |
acacttttataaggtaagaaaaataaattatttctttctacttaaaattggccttct |
277 |
Q |
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| T |
31275144 |
acacttttataaggtaagaaaaataaattatttctgtccatttaaaattggccttct |
31275088 |
T |
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Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 289 - 361
Target Start/End: Original strand, 34899903 - 34899975
Alignment:
| Q |
289 |
gagatgaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
361 |
Q |
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| T |
34899903 |
gagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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