View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2560_high_1 (Length: 443)
Name: NF2560_high_1
Description: NF2560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2560_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 119 - 433
Target Start/End: Complemental strand, 44432543 - 44432224
Alignment:
| Q |
119 |
tagaatatagatttgaatgtgattgaagaatgagattatacggttggaaagaaggggaaggaggctttccgtttccattttcggcggcgtgggatttctt |
218 |
Q |
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| T |
44432543 |
tagaatatagatttgaatgtgattgaagaatgagattatacggttgggaagaaggggaaggaggctttccgtttccattttcggcggcgtgggatttctt |
44432444 |
T |
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| Q |
219 |
ggaagggcgttttgttgttgtcttcttcattttctaatctctttcgcgcgctcttaatttgtcttttcttact----taccaaatgtatgtatcaatgaa |
314 |
Q |
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| T |
44432443 |
ggaagggcgttttgttgttgtcttcttcattttctaatctctttcgcgcgctcttaatttgtcttttcttactctaccaccaaatgtatgtatcaatgaa |
44432344 |
T |
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| Q |
315 |
cctgta-ccactatacaattgatttgaatatactatactacgccctaccccacatatctctattatacaattcattcacaacacaacaggtttgttagtt |
413 |
Q |
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| T |
44432343 |
cctgtacccactatacaattgatttgaatatactatactacgccctaccccacatatctctattatacaattcattcacaacacaacaggtttgttagtt |
44432244 |
T |
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| Q |
414 |
agttagggttctacattcat |
433 |
Q |
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|||||||||||||||||||| |
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| T |
44432243 |
agttagggttctacattcat |
44432224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 44432661 - 44432586
Alignment:
| Q |
19 |
ccttcgacaatttgaccttcttcacagttctttctcctccatcacccctgtaacaagattaacagccacaattatg |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44432661 |
ccttcgacaatttgaccttcttcacagttctttctcctccatcacccctgtaacaagattaacagccacaattatg |
44432586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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