View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2560_low_12 (Length: 238)

Name: NF2560_low_12
Description: NF2560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2560_low_12
NF2560_low_12
[»] chr3 (9 HSPs)
chr3 (1-222)||(24693144-24693365)
chr3 (2-222)||(24641775-24641995)
chr3 (2-223)||(24733297-24733518)
chr3 (14-213)||(24648551-24648750)
chr3 (40-214)||(24720695-24720872)
chr3 (7-183)||(24656350-24656526)
chr3 (14-168)||(24634261-24634415)
chr3 (116-213)||(18157716-18157813)
chr3 (56-191)||(24679909-24680044)
[»] chr5 (1 HSPs)
chr5 (116-213)||(15282104-15282201)
[»] chr2 (1 HSPs)
chr2 (116-213)||(24223602-24223699)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24693365 - 24693144
Alignment:
Q  1 tccaactatgttgctgtttttgacatctctatgttgtcacacagtttcatccacagctgatatgagcttgccagctactatatatatctttcacttttct 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24693365 tccaactatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgccagctactatatatatctttcacttttct 24693266  T
Q  101 ggtgttgttggatgtgagacacttttgtggattatcctctctcagttctcgaattggtgtatcgtcaactcattcattttagtggttacttttgtctgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24693265 ggtgttgttggatgtgagacacttttgtggattatcctctctcagttctcgaattggtgtatcgtcaactcattcattttagtggttacttttgtctgtc 24693166  T
Q  201 acaccaactgcatcaagttggt 222  Q
    ||||||||||||||||||||||    
T  24693165 acaccaactgcatcaagttggt 24693144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 24641995 - 24641775
Alignment:
Q  2 ccaactatgttgctgtttttgacatctctatgttgtcacacagtttcatccacagctgatatgagcttgccagctactatatatatctttcacttttctg 101  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24641995 ccaacaatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgtcagctactatatatatctttcacttttctg 24641896  T
Q  102 gtgttgttggatgtgagacacttttgtggattatcctctctcagttctcgaattggtgtatcgtcaactcattcattttagtggttacttttgtctgtca 201  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24641895 gtgttgttggatgtgagacacttttgtggataatcctttctcagatctcgaattggtgtatcgtcaactcattcattttagtggttacttttctctgtca 24641796  T
Q  202 caccaactgcatcaagttggt 222  Q
    |||||||||||||||||||||    
T  24641795 caccaactgcatcaagttggt 24641775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 24733297 - 24733518
Alignment:
Q  2 ccaactatgttgctgtttttgacatctctatgttgtcacacagtttcatccacagctgatatgagcttgccagctactatatatatctttcacttttctg 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24733297 ccaactttgttgctgtttttgacatctctatgttgtcacacagtttcatccacagctgatatgagcttgccagctactatatatatctttcacatttctg 24733396  T
Q  102 gtgttgttggatgtgagacacttttgtggattatcctctctcagttctcgaattggtgtatcgtcaactcattcattttagtggttacttttgtctgtca 201  Q
    ||||||||||    || ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||| ||    
T  24733397 gtgttgttggggtcgacacacttttgtggattatcctctctcagttttcgaattggtgtatcatcaactcattcgttttagtggttactttagtctgcca 24733496  T
Q  202 caccaactgcatcaagttggtg 223  Q
    ||||||||||||| | ||||||    
T  24733497 caccaactgcatcgaattggtg 24733518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 24648750 - 24648551
Alignment:
Q  14 ctgtttttgacatctctatgttgtcacacagtttcatccacagctgatatgagcttgccagctactatatatatctttcacttttctggtgttgttggat 113  Q
    ||||||||||||||||||| | ||||  ||||| ||| ||||||||| |||||||| ||| |||||||||||||||||||  | || |||||||||||      
T  24648750 ctgtttttgacatctctatttagtcatgcagttgcattcacagctgacatgagcttcccaactactatatatatctttcatatctccggtgttgttgggg 24648651  T
Q  114 gtgagacacttttgtggattatcctctctcagttctcgaattggtgtatcgtcaactcattcattttagtggttacttttgtctgtcacaccaactgcat 213  Q
      || |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||  |||||||| | ||||||||    
T  24648650 tcgacacacttttgtggattatcatctctcagttctcgaattggtgtatcatcaactcattcgttttagtggttactttattctgtcactctaactgcat 24648551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 40 - 214
Target Start/End: Complemental strand, 24720872 - 24720695
Alignment:
Q  40 cacagtttcatccacagctgatatgagcttgccagctactatatatatctttcacttttctggtgttgttggatgtgagacacttttgtggattatcctc 139  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| |||||     
T  24720872 cacattttcatccacagctgatatgagcttgccagctactatatatatctttcacatttctggtgttgttggatgtgagacgcttctgtggataatcctt 24720773  T
Q  140 tctcagttct---cgaattggtgtatcgtcaactcattcattttagtggttacttttgtctgtcacaccaactgcatc 214  Q
    |||||| |||    |||||||| |||| | |||| |||| ||| ||| |||||||| ||||| |||||||||||||||    
T  24720772 tctcagatctggaggaattggtttatcattaacttattcgtttcagtcgttactttagtctgccacaccaactgcatc 24720695  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 24656526 - 24656350
Alignment:
Q  7 tatgttgctgtttttgacatctctatgttgtcacacagtttcatccacagctgatatgagcttgccagctactatatatatctttcacttttctggtgtt 106  Q
    ||||||||||||||||||  ||  || ||||||  ||||| || |||  ||||| |||||||| | | ||||||| |  || ||||||||||||||||||    
T  24656526 tatgttgctgtttttgactgctagattttgtcatgcagttgcaaccatggctgacatgagcttcctaactactatgttcatatttcacttttctggtgtt 24656427  T
Q  107 gttggatgtgagacacttttgtggattatcctctctcagttctcgaattggtgtatcgtcaactcattcattttagt 183  Q
     ||||||||||||||||| | |||||| | ||| || | |||| |||||||| |||| |||||| |||| |||||||    
T  24656426 attggatgtgagacacttctttggattctgctccctgatttctggaattggtatatcatcaacttattccttttagt 24656350  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 24634415 - 24634261
Alignment:
Q  14 ctgtttttgacatctctatgttgtcacacagtttcatccacagctgatatgagcttgccagctactatatatatctttcacttttctggtgttgttggat 113  Q
    |||||||| || ||| ||| ||||||  ||||| || |||  ||||| |||||||| ||| |||||||    || || ||||||||||||||| ||||||    
T  24634415 ctgttttttacttctgtattttgtcatgcagttgcaaccatggctgacatgagcttaccaactactatgatcatattccacttttctggtgttattggat 24634316  T
Q  114 gtgagacacttttgtggattatcctctctcagttctcgaattggtgtatcgtcaa 168  Q
    ||||||||||| | |||||| | ||| || |||||| |||||||| |||| ||||    
T  24634315 gtgagacacttctttggattctactccctaagttctggaattggtatatcatcaa 24634261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 18157716 - 18157813
Alignment:
Q  116 gagacacttttgtggattatcctctctcagttctcgaattggtgtatcgtcaactcattcattttagtggttacttttgtctgtcacaccaactgcat 213  Q
    ||||| ||||||| ||| ||| |||| | | ||||| ||||||||||  |||| |||||| ||||||| |||||||| ||||  ||||||||||||||    
T  18157716 gagacgcttttgttgataatcgtctcccggatctcgtattggtgtattatcaagtcattcgttttagtagttactttagtcttccacaccaactgcat 18157813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 191
Target Start/End: Complemental strand, 24680044 - 24679909
Alignment:
Q  56 gctgatatgagcttgccagctactatatatatctttcacttttctggtgttgttggatgtgagacacttttgtggattatcctctctcagttctcgaatt 155  Q
    ||||| |||||||||||| |||||||    || || |||||||| ||| | ||||| |||||||||||| | |||||| | ||| || | |||| |||||    
T  24680044 gctgacatgagcttgccaactactatgatcatattccacttttccggtttagttggttgtgagacacttctttggattctactccctgaattctggaatt 24679945  T
Q  156 ggtgtatcgtcaactcattcattttagtggttactt 191  Q
    ||| |||  |||||| |||| ||||| |||||||||    
T  24679944 ggtatattatcaacttattccttttaatggttactt 24679909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 15282104 - 15282201
Alignment:
Q  116 gagacacttttgtggattatcctctctcagttctcgaattggtgtatcgtcaactcattcattttagtggttacttttgtctgtcacaccaactgcat 213  Q
    ||||| ||||||| ||| ||| |||| | | ||||| ||||||||||  |||| |||||| ||||||| |||||||| ||||  ||||||||||||||    
T  15282104 gagacgcttttgttgataatcgtctcccggatctcgtattggtgtattatcaagtcattcgttttagtagttactttagtcttccacaccaactgcat 15282201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 24223602 - 24223699
Alignment:
Q  116 gagacacttttgtggattatcctctctcagttctcgaattggtgtatcgtcaactcattcattttagtggttacttttgtctgtcacaccaactgcat 213  Q
    ||||| ||||||| ||| ||| |||| | | ||||| ||||||||||  |||| |||||| ||||||| |||||||| ||||  ||||||||||||||    
T  24223602 gagacgcttttgttgataatcgtctcccggatctcgtattggtgtattatcaagtcattcgttttagtagttactttagtcttccacaccaactgcat 24223699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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