View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2560_low_13 (Length: 237)
Name: NF2560_low_13
Description: NF2560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2560_low_13 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36968766 - 36968987
Alignment:
| Q |
1 |
ttaacctccataacgctttcgaaatcgattcaacaaaaactcaatgtctcaatcacacaatgataacatcatcagcgtgaaacgcgaattgattatgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36968766 |
ttaacctccataacgctttcgaaatcgattcaacaaaaactcaatgtctcaatcacacaatgataacatcatcagcgtgaaacgcgaattgattatgaat |
36968865 |
T |
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| Q |
101 |
atgagcagcgaggacgatgatgataacagtgacgtcgttgataacggtgacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgtt |
200 |
Q |
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| T |
36968866 |
atgagctgcgaggacgatgatgataacagtgacgtcgttgataacggtgacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgtt |
36968965 |
T |
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| Q |
201 |
acctcgccgtccagaacttgat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
36968966 |
acctcgccgtccagaacttgat |
36968987 |
T |
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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 21723501 - 21723574
Alignment:
| Q |
149 |
gacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttacctcgccgtccagaacttgat |
222 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |||| |
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| T |
21723501 |
gacgaagttgattatcaaactagtaacgaccgtcgagatctccgttctcgttaccgcgccgtccagaacatgat |
21723574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 13379425 - 13379352
Alignment:
| Q |
149 |
gacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttacctcgccgtccagaacttgat |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
13379425 |
gacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttatctcgctgtccagaacatgat |
13379352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 32137 - 32210
Alignment:
| Q |
149 |
gacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttacctcgccgtccagaacttgat |
222 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |||| |
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| T |
32137 |
gacgaagttgattatcaaactagtaacgaccgtcgagatctccgttctcgttaccgcgccgtccagaacatgat |
32210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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