View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2560_low_14 (Length: 236)
Name: NF2560_low_14
Description: NF2560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2560_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 26693945 - 26694152
Alignment:
| Q |
1 |
cttttatgcatgtaacaatatttgtaagtcataatgttggtactactataatttctatcaaatctttatttaggcttgtttgaattttcaatttatttga |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26693945 |
cttttatgcatgtaactatatttgtaagtcataatgtcggtactactataatttctatcaaatctttatttaggcttgtttgaattttcaatttatttga |
26694044 |
T |
|
| Q |
101 |
gaataccaaaagtgtattgtatattatataattattttaattttattcactcttgtaagaagtggagaattgaataaataattatatacgttcaatttat |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26694045 |
gaatacaaaaagtgtattgtatattatataattattttaattttattcactcttgtaagaagtggagaattgaataaataattatatacgttcaatttat |
26694144 |
T |
|
| Q |
201 |
tctaattt |
208 |
Q |
| |
|
|| ||||| |
|
|
| T |
26694145 |
tcaaattt |
26694152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 23847017 - 23846926
Alignment:
| Q |
23 |
tgtaagtcataatgttggtactactataatttctatcaaatcttt-atttaggcttgtttgaattttcaatttatttgagaataccaaaagt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
23847017 |
tgtaagtcataatgttggtactactataatttccctcacatcttttatttatgcttgtttgaattttcaacttatttaagaatatcaaaagt |
23846926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University