View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2560_low_2 (Length: 402)
Name: NF2560_low_2
Description: NF2560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2560_low_2 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 148 - 402
Target Start/End: Complemental strand, 25015081 - 25014827
Alignment:
| Q |
148 |
gatgacagagacacaagaatattttattttcttccaagnnnnnnnctgttgaaagaaaatgagaagattaggaatcaatccttttactattctttcatca |
247 |
Q |
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| T |
25015081 |
gatgatagagacacaagaatattttattttcttccaagaaaataactgttgaaagaaaatgagaagattaggaatcaatccttttactattcttttatca |
25014982 |
T |
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| Q |
248 |
attaaaaagaatactttaatcaaaataaatcctgtagtggacaatcttttttctctcctgggttcccgtctgtttgtcctttgactaagtgctgatcttg |
347 |
Q |
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| T |
25014981 |
attaaaaagaatactttaatcgaaataaatcctgcagtggacaatcttttttctctcctgggttcccgtctgtttgtcctttgactaagtgttgatcttg |
25014882 |
T |
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| Q |
348 |
tgagtgtttgttcctcgatgccgttgattattgaatcaatctgattgtttacttt |
402 |
Q |
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| T |
25014881 |
tgagtgtttgtccctcgatgccgttgattattgaatcaatctgatcgtttacttt |
25014827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 25015192 - 25015082
Alignment:
| Q |
14 |
ttaaatgtaagggtttttctaacctgtgtaatgttgcacgacttaagagtcatttaatgcacattttctctctatcctaataaccgtttcagcccatttt |
113 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||| |
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| T |
25015192 |
ttaaatgtaagggtttttctaacctgtgcaatgttgcatagcttaagagtcatttaatgcacattttctctttctcctaataaccatttcagcccctttt |
25015093 |
T |
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| Q |
114 |
tctgtgatatt |
124 |
Q |
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| T |
25015092 |
tctgtgatatt |
25015082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 25014449 - 25014516
Alignment:
| Q |
23 |
agggtttttctaacctgtgtaatgttgcacgacttaagagtcatttaatgcaca-ttttctctctatc |
89 |
Q |
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| T |
25014449 |
aggggttttctaacctgtgcaatgttgcacagcttaagagtcatttaatgcacatttttctctctatc |
25014516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 299 - 397
Target Start/End: Complemental strand, 19116229 - 19116131
Alignment:
| Q |
299 |
tctctcctgggttcccgtctgtttgtcctttgactaagtgctgatcttgtgagtgtttgttcctcgatgccgttgattattgaatcaatctgattgttt |
397 |
Q |
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| T |
19116229 |
tctctcctgggtttccgtctgattgtcctttgactaaacgttgaccttgtgagtgcttgttcctcgatgcggttgattgttgaatcaatctgatcgttt |
19116131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 263
Target Start/End: Original strand, 43230469 - 43230708
Alignment:
| Q |
27 |
tttttctaacctgtgtaatgttgcacgacttaagagtcatttaatgcacattttctctctatcctaataaccgtttcagcccatttttctgtgatattaa |
126 |
Q |
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|||||||||| ||| |||||||||| ||||||||||||||| |||||||| ||||| || ||||||| ||||| ||||||||| ||| |||||| |
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| T |
43230469 |
tttttctaacatgtacaatgttgcacagtttaagagtcatttaaa-cacattttttctctctc-taataactatttcaacccatttttatgtt-tattaa |
43230565 |
T |
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| Q |
127 |
ttacctcttctcttgaaaatggatgacagagacacaagaatattttattttcttcc-------aagnnnnnnnctgttgaaagaaaatgagaagattagg |
219 |
Q |
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|||||||||||||||||||||||||| ||||| ||| | ||| |||||||||||| || |||||||||||||||||||||||||| |
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| T |
43230566 |
ttacctcttctcttgaaaatggatgatggagacgcaatagtatgttattttcttcccaaaagaaataagaattgtgttgaaagaaaatgagaagattagg |
43230665 |
T |
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| Q |
220 |
aatcaatccttttactattctttcatcaattaaaaagaatactt |
263 |
Q |
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||| ||| | |||||||||||||||| ||| |||| ||| |||| |
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| T |
43230666 |
aattaat-catttactattctttcataaatcaaaatgaaaactt |
43230708 |
T |
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