View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2560_low_4 (Length: 381)
Name: NF2560_low_4
Description: NF2560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2560_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 94 - 367
Target Start/End: Original strand, 42677349 - 42677625
Alignment:
| Q |
94 |
tcccttctttactgagaaagggtttt-gtgttgcttgttttgatgttagagaatggatacttgttaaataagtgatgcatgattctgcactgtcaattca |
192 |
Q |
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| T |
42677349 |
tcccttctttactgagaaagggtttttgtgttacatgttttgatgttagagaatggatacttgttaaataagtgatgcatgattctgcactgtcaattca |
42677448 |
T |
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| Q |
193 |
aaacattaactagtgtcgtaggaacctttaatgtgcttgataatgatttttagaaatta----ttttattcctcctcccttcttattgtgaagtgtgaaa |
288 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42677449 |
aaacattaactggtgtcgtaggaacctttaatgtgcttgataatgatttttagaaattatattttttattcctcctcccttcttattgtgaagtgtgaaa |
42677548 |
T |
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| Q |
289 |
gtgtttttgtattgttttcattagggttttgatgttagacttagagagaatggaagtttaatttaagaaagtaactact |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
42677549 |
gtgtttttgtattgttttcattagggttttgatgttagactt--agagaatgaaagtttaatttaagaaagtaactact |
42677625 |
T |
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