View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2560_low_5 (Length: 329)
Name: NF2560_low_5
Description: NF2560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2560_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 14221032 - 14220719
Alignment:
| Q |
1 |
tactgcactgtggggacaagaagtttagataatgcattgcaggctattgttagaattttgtcaaagcaaagtgtaatgggaagcaatgactcacataatg |
100 |
Q |
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| T |
14221032 |
tactgcactgttgggacaagaagtttggataatgcattgcaggctattgttagaattttgtcaaagcaaagtgtaatgggaagcaatgactcacataatg |
14220933 |
T |
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| Q |
101 |
tatgtaaataggcatgagttaaattgatgaatatcagcatttgaagtgacgtgattctcaaaatccaggcagcataatatatgcataccgtggaagtttc |
200 |
Q |
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| T |
14220932 |
tatgtaaataggcatgagttaaattgatgaatatcagcattagaagtgacgtgattctcaaaatccaggcagcataatatatgcataccgtggaagtttc |
14220833 |
T |
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| Q |
201 |
tgcgatataacaccaccacagttgatgaaacttggtttagcattagaagcaacaaaaagaccttacttaagttgttgtgtttaccctgtataatcagtaa |
300 |
Q |
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| T |
14220832 |
tgcgatataacaccaccacagttgatgaaacttggtttagcattagaagcaacaaaaagaccttacttaagttgttgtgtttaccctgtataatcagtaa |
14220733 |
T |
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| Q |
301 |
gagctgaacatttt |
314 |
Q |
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| T |
14220732 |
gagctgaacatttt |
14220719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 264
Target Start/End: Original strand, 41517852 - 41517994
Alignment:
| Q |
122 |
aattgatgaatatcagcatttgaagtgacgtgattctcaaaatccaggcagcataatatatgcataccgtggaagtttctgcgatataacaccaccacag |
221 |
Q |
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| T |
41517852 |
aattgatgaatgggagcatttgaagtggcttgattctcagaaacaagggagtgttctctatgcatgccttggaagtttatgcaatataacaccattacag |
41517951 |
T |
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| Q |
222 |
ttgatgaaacttggtttagcattagaagcaacaaaaagacctt |
264 |
Q |
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| T |
41517952 |
ttgatagaacttggtttagcattagaagcaacaaaaatacctt |
41517994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 41536904 - 41536971
Alignment:
| Q |
195 |
agtttctgcgatataacaccaccacagttgatgaaacttggtttagcattagaagcaacaaaaagacc |
262 |
Q |
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| T |
41536904 |
agtttatgcaatttaacaccaccacagttgatagagcttggtttagcattagaagcaacaaaaagacc |
41536971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 8136797 - 8136710
Alignment:
| Q |
177 |
atatatgcataccgtggaagtttctgcgatataacaccaccacagttgatgaaacttggtttagcattagaagcaacaaaaagacctt |
264 |
Q |
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|||||||||| || ||||||||| || || ||||| ||| ||||||||| | || || |||||||||||||||||||||| ||||| |
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| T |
8136797 |
atatatgcatgccttggaagtttatgtaatttaacatcactacagttgatagagctagggttagcattagaagcaacaaaaaaacctt |
8136710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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