View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2560_low_7 (Length: 257)
Name: NF2560_low_7
Description: NF2560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2560_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 36968203 - 36968430
Alignment:
| Q |
13 |
tcgaagaatataaatgaaagaatcaactgaaattgaaggttgctcaaaagtcatctttaatttctcaggnnnnnnnnnnnnnccacgagaacaacaatca |
112 |
Q |
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| T |
36968203 |
tcgaacaaaataaataaaagaatcaactgaaattgaaggttgctcaaaagtcatctttaatttctca---aaaaaaaaagaaacacgagaacaacaatca |
36968299 |
T |
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| Q |
113 |
gaacctaactttcgaacacctttaagcaaacaaaaa-tgtctatggaaaatgaaaattgttcttctcccaacaaaaaacgattaacgcttattaccatac |
211 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36968300 |
gaacctaactttcgaacacctttaagcaaaaaaaaaatgtttatgaaaaatgaaaactgttcttctcccaacaaaaaacgcttaacgcttattaccatac |
36968399 |
T |
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| Q |
212 |
aaaccgactaaaatacatctacgtgacttaa |
242 |
Q |
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|||| ||||||||||||||| |||||||||| |
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| T |
36968400 |
aaactgactaaaatacatctgcgtgacttaa |
36968430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 23443335 - 23443363
Alignment:
| Q |
163 |
gaaaattgttcttctcccaacaaaaaacg |
191 |
Q |
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| T |
23443335 |
gaaaattgttcttctcccaacaaaaaacg |
23443363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 23474929 - 23474957
Alignment:
| Q |
163 |
gaaaattgttcttctcccaacaaaaaacg |
191 |
Q |
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| T |
23474929 |
gaaaattgttcttctcccaacaaaaaacg |
23474957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 17476268 - 17476240
Alignment:
| Q |
163 |
gaaaattgttcttctcccaacaaaaaacg |
191 |
Q |
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| T |
17476268 |
gaaaattgttcttctcccaacaaaaaacg |
17476240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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