View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2561_high_1 (Length: 717)

Name: NF2561_high_1
Description: NF2561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2561_high_1
NF2561_high_1
[»] chr2 (1 HSPs)
chr2 (1-704)||(26048902-26049605)


Alignment Details
Target: chr2 (Bit Score: 684; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 1 - 704
Target Start/End: Complemental strand, 26049605 - 26048902
Alignment:
Q  1 aataatcataattactctgtgctcatgatactgtaagttttcttttaaaattatggtctacgaaagcaattgtcagtgtgtttgtttccgcggccacgac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26049605 aataatcataattactctgtgctcatgatactgtaagttttcttttaaaattatggtctacgaaagcaattgtcagtgtgtttgtttccgcggccacgac 26049506  T
Q  101 actttcatcgtgctttcatttagaagctcaaagtagtagtttcaatactatcacatgtccaacacatatcaactgcaaaacacaaacaattaacgtgacc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26049505 actttcatcgtgctttcatttagaagctcaaagtagtagtttcaatactatcacatgtccaacacatatcaattgcaaaacacaaacaattaacgtgacc 26049406  T
Q  201 aaaacatcaacagttctaagatctttgcaactgcaattgctgcaacgcaaacaacatttgtctgggatttccaacaatattgaaaaccaaatctcaacca 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26049405 aaaacatcaacagttctgagatctttgcaactgcaattgctgcaacgcaaacaacatttgtctgggatttccaacaatattgaaaaccaaatctcaacca 26049306  T
Q  301 taactgcaaattaaaaccacgtttgacaaacgcaatgaatcttaagactcagaatacacgacccagctagtaccactcgtagtcttcactcccttctctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26049305 taactgcaaattaaaaccacgtttgacaaacgcaatgaatcttaagactcagaatacacgacccagctagtaccactcgtagtcttcactcccttctctt 26049206  T
Q  401 tcatttcccttatcattcgatcagcctcctctcgtctcccaacactagcataaatcttagccaacaaaacataatttgcagcattatctggttcaacctc 500  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26049205 tcatttcccttatcattctatcagcctcctctcgtctcccaacactagcataaatcttagccaacaaaacataatttgcagcattatctggttcaacctc 26049106  T
Q  501 agccaaagccttccccgcaatctcagccaaccccaactccccataattcgtacaagcaccaagaagagcaccccatgccttagcagtcactttcacaggc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26049105 agccaaagccttccccgcaatctcagccaaccccaactccccataattcgtacaagcaccaagaagagcaccccatgccttggcagtcactttcacaggc 26049006  T
Q  601 atccccttaataacctcataagcttcatacaatctcccagctctactcaaaacatcaaccaaacatgaataatgttcgctattcggctcaacgccataat 700  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26049005 atccctttaataacctcataagcttcatacaatctcccagctctactcaaaacatcaaccaaacatgaataatgttcgctattcggctcaacgccataat 26048906  T
Q  701 ccct 704  Q
    ||||    
T  26048905 ccct 26048902  T

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