View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2561_high_10 (Length: 250)
Name: NF2561_high_10
Description: NF2561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2561_high_10 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 45309214 - 45309459
Alignment:
| Q |
10 |
attatacttgatccaacatcttcagaattgttgttgtttgcctattttcatagaccaaactgatcagatttgtctagaatacctaactaaaatattataa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45309214 |
attatacttgatccaacatcttcagaattgttgttgtttgcctattttcatagaccaaactgatcagatttgtctagaatatctaactaaaatattataa |
45309313 |
T |
|
| Q |
110 |
taacacagatttttcctacaagtaggtgtagaaagtataaaacacctcaatccagagtcgttcaactcaatactgttaaactaattcagca-----ttgt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45309314 |
taacacagatttttcctacaagtaggtgtagaaagtataaagcacctcaatccagagtcgttcaactcaatactgttaaactaattcagcattgttttgt |
45309413 |
T |
|
| Q |
205 |
tatgttaccttgatgtacttagttgaccataagactcctttcatga |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45309414 |
tatgttaccttgatgtacttagttgaccataagactcctttcatga |
45309459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 88043 - 88116
Alignment:
| Q |
174 |
actcaatactgttaaactaattcagcattgttatgttaccttgatgtacttagttgaccataagactcctttca |
247 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| |
|
|
| T |
88043 |
actcaatactgttaaacaaattcagcattgttatgttaccctgatgtacttagttgaccttaagattcctttca |
88116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University