View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2561_high_2 (Length: 410)
Name: NF2561_high_2
Description: NF2561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2561_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 54085233 - 54085019
Alignment:
| Q |
76 |
cttaattaagtaatactctttt--atatatctgaattcagccatgatacatcattacattgccatcatctacgactcaaaaaactaaagctatgccaaat |
173 |
Q |
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| T |
54085233 |
cttaattaagtaatactcttttttatatatctgaattcagccatgatacatcattacattgccatcatctacgactcaaaaaactaaagctatgccaaat |
54085134 |
T |
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| Q |
174 |
tacaagtagatattggaaatttggaatcataacaggaaaagactaaaacaaaggttgaattgaaacacaactgatttttattactaaaacacacatgatg |
273 |
Q |
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| T |
54085133 |
tacaagtagatattggaaatttggaatcataacaggaaaagactaaaacaaaggttgaattgaaacacaactgatttttattactaaaacacacatgatg |
54085034 |
T |
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| Q |
274 |
catggcatcaaccat |
288 |
Q |
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| T |
54085033 |
catggcatcaaccat |
54085019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 274 - 410
Target Start/End: Complemental strand, 54084997 - 54084861
Alignment:
| Q |
274 |
catggcatcaaccatctaacatgttcattatttaggtacacaccagctactaatttattgcaccaaacagtctaagattttcttttatttaaatcaaccg |
373 |
Q |
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| T |
54084997 |
catggcatcaaccatctaacatgttcattatttaggtacacaccagctactaatttattgcaccaaacagtctaagattttcttttatttaaatcaaccg |
54084898 |
T |
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| Q |
374 |
tattatctatatatttgtcaatcaattcatgcttttc |
410 |
Q |
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| T |
54084897 |
tattatctatatatttgtcaatcaattcatgcttttc |
54084861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 97 - 306
Target Start/End: Complemental strand, 54081802 - 54081596
Alignment:
| Q |
97 |
tatatatctgaattcagccatgatacatcattacattgccatcatctacgactcaaaaaactaaagctatgccaaattacaagtagatattggaaatttg |
196 |
Q |
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| T |
54081802 |
tatatatctgaattcaaccatggtacaatacaacagtgccatcatctacaactcaaaaagttaaagctatgccaaattacaagtagatattggaaattt- |
54081704 |
T |
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| Q |
197 |
gaatcataacaggaaaagactaaaac-aaaggttg-aattgaaacacaactgatttttatt-actaaaacacacatgatgcatggcatcaaccatctaac |
293 |
Q |
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| T |
54081703 |
---tcataaca--agaagactaaaacaaaaggttgaaattgaaacacaactaatttttcttcactaaaacacacatgatgcatggaatcaaccatctaac |
54081609 |
T |
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| Q |
294 |
atgttcattattt |
306 |
Q |
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| T |
54081608 |
gtgttcattattt |
54081596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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