View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2561_low_1 (Length: 717)

Name: NF2561_low_1
Description: NF2561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2561_low_1
NF2561_low_1
[»] chr2 (1 HSPs)
chr2 (1-704)||(26048902-26049605)


Alignment Details
Target: chr2 (Bit Score: 684; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 1 - 704
Target Start/End: Complemental strand, 26049605 - 26048902
Alignment:
Q  1 aataatcataattactctgtgctcatgatactgtaagttttcttttaaaattatggtctacgaaagcaattgtcagtgtgtttgtttccgcggccacgac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26049605 aataatcataattactctgtgctcatgatactgtaagttttcttttaaaattatggtctacgaaagcaattgtcagtgtgtttgtttccgcggccacgac 26049506  T
Q  101 actttcatcgtgctttcatttagaagctcaaagtagtagtttcaatactatcacatgtccaacacatatcaactgcaaaacacaaacaattaacgtgacc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26049505 actttcatcgtgctttcatttagaagctcaaagtagtagtttcaatactatcacatgtccaacacatatcaattgcaaaacacaaacaattaacgtgacc 26049406  T
Q  201 aaaacatcaacagttctaagatctttgcaactgcaattgctgcaacgcaaacaacatttgtctgggatttccaacaatattgaaaaccaaatctcaacca 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26049405 aaaacatcaacagttctgagatctttgcaactgcaattgctgcaacgcaaacaacatttgtctgggatttccaacaatattgaaaaccaaatctcaacca 26049306  T
Q  301 taactgcaaattaaaaccacgtttgacaaacgcaatgaatcttaagactcagaatacacgacccagctagtaccactcgtagtcttcactcccttctctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26049305 taactgcaaattaaaaccacgtttgacaaacgcaatgaatcttaagactcagaatacacgacccagctagtaccactcgtagtcttcactcccttctctt 26049206  T
Q  401 tcatttcccttatcattcgatcagcctcctctcgtctcccaacactagcataaatcttagccaacaaaacataatttgcagcattatctggttcaacctc 500  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26049205 tcatttcccttatcattctatcagcctcctctcgtctcccaacactagcataaatcttagccaacaaaacataatttgcagcattatctggttcaacctc 26049106  T
Q  501 agccaaagccttccccgcaatctcagccaaccccaactccccataattcgtacaagcaccaagaagagcaccccatgccttagcagtcactttcacaggc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26049105 agccaaagccttccccgcaatctcagccaaccccaactccccataattcgtacaagcaccaagaagagcaccccatgccttggcagtcactttcacaggc 26049006  T
Q  601 atccccttaataacctcataagcttcatacaatctcccagctctactcaaaacatcaaccaaacatgaataatgttcgctattcggctcaacgccataat 700  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26049005 atccctttaataacctcataagcttcatacaatctcccagctctactcaaaacatcaaccaaacatgaataatgttcgctattcggctcaacgccataat 26048906  T
Q  701 ccct 704  Q
    ||||    
T  26048905 ccct 26048902  T

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