View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2561_low_11 (Length: 302)
Name: NF2561_low_11
Description: NF2561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2561_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 45229749 - 45230035
Alignment:
| Q |
1 |
gaagatgcaaacatgattaccactttgacttttgattaatttagttgttccaatgttaaatgtgatcattgtcttccttcccaagcataatactatttaa |
100 |
Q |
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| T |
45229749 |
gaagatgcaaacatgattaccactttgacttttgattaatttagttgttccaatgttaaatgtgatcattgtcttccttcccaagcataatactatttaa |
45229848 |
T |
|
| Q |
101 |
tttctattgaaagcagaaccactcctgaagcaagtactaaaaattcagcatggacaacaaccaagtaatttacaagctagaagt-nnnnnnnnttggagc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45229849 |
tttctattgaaagcagaaccactcctgaagcaagtactaaaaattcagcatggacaacaaccaagtaatttacaagctagaagtaaaaaaaaattggagc |
45229948 |
T |
|
| Q |
200 |
agttggccccaaaactcaaagaagatatgaattgtatacatacaatatttacaattatatgtacaaaaccattgacagagatgcatt |
286 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45229949 |
agttggccccaaaactcaaagaagatatgaattgtatgcatacaatatttacaattatatgtacaaaaccattgacagagatgcatt |
45230035 |
T |
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