View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2561_low_12 (Length: 262)
Name: NF2561_low_12
Description: NF2561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2561_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 10249391 - 10249642
Alignment:
| Q |
20 |
ttaagctaaaattggtttgaaagaaaaaataagttgctagaccaccgggtgaaaggggnnnnnnncttagccatttaatattttcatttttgaaagatgt |
119 |
Q |
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| T |
10249391 |
ttaagctaaaattggtttgaaagaaaaaataagttgctagaccaccgggtgaaaggggaaaaaaatttagccatttaatattttcatttttgaaagatgt |
10249490 |
T |
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| Q |
120 |
ttggactagaatcactagatggtgaattaaacttgtctcgttaaaaacgtgttttaattgactta-------------------ttgtgagattgtttta |
200 |
Q |
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| T |
10249491 |
ttggactagaatcactagatggtgaattaaatttgtctcgttaaaaacatgttttaattgacttatttgaacgagtataaacatttgggagattgtttta |
10249590 |
T |
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| Q |
201 |
aaataatttattataataagattatataagctattttcaacttattttcatctc |
254 |
Q |
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| T |
10249591 |
aaataatttattataataagat--tataagttattttcaacttattttcatctc |
10249642 |
T |
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