View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2561_low_14 (Length: 241)
Name: NF2561_low_14
Description: NF2561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2561_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 54084773 - 54084609
Alignment:
| Q |
1 |
cgacttctaccaccggatcccgaaccagcccgagagcctgcatatgagcctgcctccgaccctgccccagaaccggaaccggaactagaagatgaagatg |
100 |
Q |
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| T |
54084773 |
cgacttctaccacctgatcccgaaccagcccgagagcctgcatatgagcctgcctccgaccctgccccagaaccggaaccggaactagaagatgaagatg |
54084674 |
T |
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| Q |
101 |
atgatgaacttgaggaagaactagaaccagagccagagccagctcctgctccggctccagagcca |
165 |
Q |
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| T |
54084673 |
atgatgaacttgaggaagaactagaaccagagccagagccagctcctgctccggctccagagcca |
54084609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 54081370 - 54081147
Alignment:
| Q |
1 |
cgacttctaccaccggatcccgaaccagcccgagagcctgcatatgagcctgcctccgaccctgccccagaaccggaaccggaactagaagatgaagatg |
100 |
Q |
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| T |
54081370 |
cgacttctaccacctgatcccgaaccagcccgagagcctgcatatgagcctgcttccgaccctgccccggaaccagacccagaactagaagacgaagagg |
54081271 |
T |
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| Q |
101 |
atgatgaacttgaggaagaactagaaccagagccagagccagctcctgctccggctccagagccactgccacctccaattcccaagcctactcctgcacc |
200 |
Q |
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| T |
54081270 |
acgatgaacttgaggaagagctagaaccagaaccagagcctgcaccagctccggctccagagccactgccacctccaattcctaaaccaactcctgcacc |
54081171 |
T |
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| Q |
201 |
aagtccaattcccaacccaccaag |
224 |
Q |
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| T |
54081170 |
aagtccaattcccaatccaccaag |
54081147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 54084617 - 54084529
Alignment:
| Q |
133 |
ccagagccagctcctgctccggctccagagccactgccacctccaattcccaagcctactcctgcaccaagtccaattcccaacccacc |
221 |
Q |
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| T |
54084617 |
ccagagccagctcctgctccggctccagagccactgccacctccaattcccaagcctactcctgcaccaagtccaattcccaacccacc |
54084529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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