View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2561_low_4 (Length: 409)
Name: NF2561_low_4
Description: NF2561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2561_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 2424412 - 2424122
Alignment:
| Q |
1 |
aaaaagaagtatagaaaaagagaagttgacaatgatgccatcacaagtgacatgttagtagaaatattagaagaatccattagaacaatttggcgtttca |
100 |
Q |
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| T |
2424412 |
aaaaagaagtatagaaaaagagaagttgacaatgatgccatcacaagtgacatgttagtagaaatattagaagaatccattagaacaatttggcgtttca |
2424313 |
T |
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| Q |
101 |
taagaggtgataaagatgcatcaaatttgacaattaaatgtcttaaagaacaacatgtggagctacaagaccctgctgattcacaacttctagtggagat |
200 |
Q |
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| T |
2424312 |
taagaggtgatgaagatgcatcaaatttgacaattaaatgtcttaaagaacaacatgtggagctacaagaccctgctgattcacaacttctagtggagat |
2424213 |
T |
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| Q |
201 |
tctaacggatcttcaaaaggtaattctagcttcaaatgatacttattttctaaccttaaaaatgttttaattattctctcaatataagtaa |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2424212 |
tctaacggatcttcaaaaggtaattctagcttcaaatgatacttattttctaaccttaaaaatgttttaattattctctcaatataagtaa |
2424122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 393
Target Start/End: Complemental strand, 2424067 - 2424020
Alignment:
| Q |
346 |
aaaatgtataaactttagttcttgtgcctaacttcactaatcttattg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2424067 |
aaaatgtataaactttagttcttgtgcctaacttcactaatcttattg |
2424020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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