View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2561_low_5 (Length: 377)
Name: NF2561_low_5
Description: NF2561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2561_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 43563895 - 43564242
Alignment:
| Q |
18 |
cacaaagtgcatgccaaacataaacatcatccaaacctttgaacttagtcctcaaatcccttgtgaaagccttcaaaccatactccnnnnnnnctttaca |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43563895 |
cacaaagtgcatgccaaacataaacatcatctaaacctttgaacttagtcctcaaatcccttgtgaaagccttcaaaccatactcctttttttctttaca |
43563994 |
T |
|
| Q |
118 |
acaaaatcttccacactcacttttttgaacaatactactttgttctccaccaaagagatcatcaatttcttttattaatttctcgatctttgactcaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43563995 |
acaaaatcttccacactcacttttttgaacaatactactttgttctccaccaaagagatcatcaatttcttttattaatttctcgatctttgactcaatt |
43564094 |
T |
|
| Q |
218 |
tcagccaaatcagaactttcagatgaaattgcctcctgtctttgtttcctcaaatgctcatgttcaattccctttaaaatcaactccttaatcgtttttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43564095 |
tcagccaaatcagaactttcagatgaaattgcctcctgtctttgtttcctcaaatgctcatgttcaattccctttaaaatcaactccttaatcgtttttg |
43564194 |
T |
|
| Q |
318 |
gattaaaaggaggtgaattaggacctagtaacaatccactttcatatt |
365 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43564195 |
gattaaaaggaggtgaattaggacctagtaacaatccactttcatatt |
43564242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 134 - 365
Target Start/End: Original strand, 36431966 - 36432197
Alignment:
| Q |
134 |
tcacttttttgaacaatactactttgttctccaccaaagagatcatcaatttcttttattaatttctcgatctttgactcaatttcagccaaatcagaac |
233 |
Q |
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||||||||| || || |||||||| |||||||||||||||||||||||||||||| | ||||| || ||||||||||||||| |||||||||||||||| |
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| T |
36431966 |
tcactttttggagcaccactactttcttctccaccaaagagatcatcaatttctttgactaattgcttgatctttgactcaatctcagccaaatcagaac |
36432065 |
T |
|
| Q |
234 |
tttcagatgaaattgcctcctgtctttgtttcctcaaatgctcatgttcaattccctttaaaatcaactccttaatcgtttttggattaaaaggaggtga |
333 |
Q |
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| | ||| ||| |||||||| ||||||| || ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| |
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| T |
36432066 |
tcttggataaaactgcctcctctctttgtctctccaaatgctcatgttcaattccctttgtaatcaactccttaattgttttcggattaaaaggaggtga |
36432165 |
T |
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| Q |
334 |
attaggacctagtaacaatccactttcatatt |
365 |
Q |
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||||||||| | | |||||||||||| |||| |
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| T |
36432166 |
attaggacccaacaccaatccactttcgtatt |
36432197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 36431874 - 36431955
Alignment:
| Q |
18 |
cacaaagtgcatgccaaacataaacatcatccaaacctttgaacttagtcctcaaatcccttgtgaaagccttcaaaccata |
99 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36431874 |
cacaaagtgcatgccaaacataaacatcatccaaacctttgaacttagtcctcaaatcccttgtgaaagccttcaatccata |
36431955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 365
Target Start/End: Complemental strand, 43974591 - 43974360
Alignment:
| Q |
134 |
tcacttttttgaacaatactactttgttctccaccaaagagatcatcaatttcttttattaatttctcgatctttgactcaatttcagccaaatcagaac |
233 |
Q |
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||||||||| ||||| || ||||||||||||||||||||||||||| |||||| |||||| ||| | ||| ||||||||||| || ||||||||||||| |
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| T |
43974591 |
tcactttttggaacactatgactttgttctccaccaaagagatcatctatttctcttattacttttttgatatttgactcaatctctgccaaatcagaac |
43974492 |
T |
|
| Q |
234 |
tttcagatgaaattgcctcctgtctttgtttcctcaaatgctcatgttcaattccctttaaaatcaactccttaatcgtttttggattaaaaggaggtga |
333 |
Q |
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| | |||| | || | |||| | ||| ||| ||| | ||||| ||||||||||||| |||||||||| | || | | ||||||||| ||| ||||| |
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| T |
43974491 |
tcttagataagatagagtcctctttttccttcaccaatttctcatattcaattccctttgaaatcaactcatgaaacttctttggattataagtaggtgc |
43974392 |
T |
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| Q |
334 |
attaggacctagtaacaatccactttcatatt |
365 |
Q |
| |
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||||||||||| |||||||||||||||||||| |
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| T |
43974391 |
attaggacctaataacaatccactttcatatt |
43974360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 43974680 - 43974595
Alignment:
| Q |
18 |
cacaaagtgcatgccaaacataaacatcatccaaacctttgaacttagtcctcaaatcccttgtgaaagccttcaaaccatactcc |
103 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||| |
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| T |
43974680 |
cacaaagtgcatgccaaacataaatatcatccaaacctttgaacttagtcctaaggtcccttgtgaaagccttcaatccatactcc |
43974595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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