View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2561_low_6 (Length: 375)
Name: NF2561_low_6
Description: NF2561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2561_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 34135243 - 34134881
Alignment:
| Q |
1 |
tttcattcctaaatatatgtacgccaccaaagagcctaatgccaaacattcttataaaagtcacactccaataatagatgtttgatagtttccgcttacc |
100 |
Q |
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| T |
34135243 |
tttcattcctaaatatatgtacgccaccaaagaacctaatgcctaacattcttataaaagtcacactccaataatagatgtttgatagtttccgcttacc |
34135144 |
T |
|
| Q |
101 |
ccatcctaaacataacaaagaacccgcaggatctatttaagataagttaacgtttaatatcagtatgtaatgctttcacttaagtatgcctaaacaaagg |
200 |
Q |
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| T |
34135143 |
ccatcctaaacataacaaagaacccgcaggatctatttaagataagttaacgtttaatatcagtatgtaatgctttcacttaagtatgcctaaacaaagg |
34135044 |
T |
|
| Q |
201 |
tatgtttcatcnnnnnnntattatgtaagcctttcacttcaatagtttaattaattaactcatatcataagcatcgacttgtttgtttaattaaacaaat |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34135043 |
tatgtttcatcaaaaaaatattatgtaagcctttcacttcaatagtttaattaattaactcatatcataagcatcgacttgtttgtttaattaaacaaat |
34134944 |
T |
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| Q |
301 |
aatttaacaaatcaagcttatagttcacgaataacttagtttactcacaccatgataatcttg |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34134943 |
aatttaacaaatcaagcttatagttcacgaataacttagtttactcacaccatgataatcttg |
34134881 |
T |
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