View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2561_low_9 (Length: 324)
Name: NF2561_low_9
Description: NF2561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2561_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 12994109 - 12994238
Alignment:
| Q |
42 |
ctcttctcccaagtcccaattagacatacacttcccaattatctccattttagtgaaagttggctcttttttctactcatcatacaattggttcccagta |
141 |
Q |
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| T |
12994109 |
ctcttctcccaagtcccaattagacatacacttcccaattatctccattttagtgaaagttggctcttttttctactcatcatacaattggttcccagta |
12994208 |
T |
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| Q |
142 |
tataccattacatatataattgaaatgaaa |
171 |
Q |
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| T |
12994209 |
tataccattacatatataattgaaatgaaa |
12994238 |
T |
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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 12994288 - 12994371
Alignment:
| Q |
225 |
cccaatggtagaagtggaaccaatgaaaatacacaccggccatcaatattaaaacattttggcgtggatattataaattcataa |
308 |
Q |
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| T |
12994288 |
cccaatggtagaagtggaaccaatgaaaatacacaccggccatcaatattaaaacattttggcgtggatattataacttcataa |
12994371 |
T |
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