View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_12 (Length: 456)
Name: NF2562_high_12
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 20014746 - 20014300
Alignment:
| Q |
1 |
aaagttagagttagtaatcattgagacataaattgatttatgaacaatcataaacgtataaaattcattaaggataaatttaaacgagtaaaataccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20014746 |
aaagttagagttagtaatcattgagacataaattgatttatgaacaatcataaacgtataaaattcattaaggataaatttaaacgagtaaaataccaaa |
20014647 |
T |
|
| Q |
101 |
gtaataaatacgagtaaaacacaagtaaaggatcaccggttgatgattctttgactctcgaatggcttcggtcactcctaagctttcaaaattgttgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20014646 |
gtaataaatacgagtaaaacacaagtaaaggatcaccggttgatgattctttgactctcgaatggcttcggtcactcctaagctttcaaaattgttgttc |
20014547 |
T |
|
| Q |
201 |
tgctttcacctgctcattgaaagttgtttttccactaacctaggtttctaatatttataggcgagtgttttccaaaaaattaggattatttgggccacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20014546 |
tgctttcacctgctcattgaaagttgtttttccactaacctaggtttctaatatttataggcgagtgtttcccaaaaaattaggattatttgggccacaa |
20014447 |
T |
|
| Q |
301 |
ctcgggggtgtccaactcacaacgcgagttaaacagagaacaatcactacacctttcattcataactcgtgatgcggagctcgtagtctggattgcgaga |
400 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20014446 |
ctcgggggtgtccaactcacaacgcgagttaaatagagaacaatcactacgcctttcattcataactcgtgatgcggagctcgtagtctggattgcgaga |
20014347 |
T |
|
| Q |
401 |
taagtagaggatgaatatgataatttctttttgattctgtgctgctc |
447 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
20014346 |
taagtagaggatgaatatgataatttctttttgattccgtgatgctc |
20014300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 27128139 - 27128190
Alignment:
| Q |
116 |
aaaacacaagtaaaggatcaccggttgatgattctttgactctcgaatggct |
167 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||| || ||||||||||||| |
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|
| T |
27128139 |
aaaatacaagtaaaggatcaccagttgatgattcactggctctcgaatggct |
27128190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 17785025 - 17785066
Alignment:
| Q |
123 |
aagtaaaggatcaccggttgatgattctttgactctcgaatg |
164 |
Q |
| |
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|
| T |
17785025 |
aagtaaaggatcactggttgatgattttttgactcccgaatg |
17785066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 4550841 - 4550796
Alignment:
| Q |
225 |
tgtttttccactaacctaggtttctaatatttataggcgagtgttt |
270 |
Q |
| |
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|||||||||| |||||||||| || |||||||||||||||||||| |
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|
| T |
4550841 |
tgtttttccattaacctaggtgcctgatatttataggcgagtgttt |
4550796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 978705 - 978753
Alignment:
| Q |
116 |
aaaacacaagtaaaggatcaccggttgatgattctttgactctcgaatg |
164 |
Q |
| |
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||||||| || ||| ||||||||||||||||||| |||||||| ||||| |
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| T |
978705 |
aaaacacgagaaaatgatcaccggttgatgattcattgactcttgaatg |
978753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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