View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_17 (Length: 403)
Name: NF2562_high_17
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 11192556 - 11192154
Alignment:
| Q |
1 |
ttatattccgttttgttctgaagtttagcacatcctcttcatagtttcctttaccaatccactgtattcaaaattttagttatgaaggattgatttttaa |
100 |
Q |
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| T |
11192556 |
ttatattccgttttgttctgaagtttagcacatcctcttcatagtttcctttaccaatccactgtattcaaaattttagttatgaaggattgatttttaa |
11192457 |
T |
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| Q |
101 |
ggtgactctttttgctacaattgcaggctatgaagaggtttattgatggaagcgcgatctcggtcttggacacaaggctggatcaaacttcagcaaataa |
200 |
Q |
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| T |
11192456 |
ggtgactctttttgctacaattgcaggctatgaagaggtttattgatggaaacgcgatctcggtcttggacacaagactggatcaaacttcagcaaataa |
11192357 |
T |
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| Q |
201 |
tttggccttagaaaagatacttgaactagctttacagtgcttggctccacatagacaaaataggcctaacatgaagagatgtgctgagatcctttgggcc |
300 |
Q |
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| T |
11192356 |
tttggccttagaaaagatacttgaactagctttacagtgcttggctccacatagacaaaataggcctaacatgaagagatgtgctgagatcctttgggct |
11192257 |
T |
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| Q |
301 |
attcgcaaggattacagagagatatcggcttcaaactttcgatcatattcgactacttcccaaaggagcgcctcattgagagagtgacaaacatagagtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11192256 |
attcgcaaggattacagagagatatcggcttcaaactttcgatcatattcgactacttcccaaaggagtgcctcattgagagagtgacaaacatagagtt |
11192157 |
T |
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| Q |
401 |
cat |
403 |
Q |
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| T |
11192156 |
cat |
11192154 |
T |
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