View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_18 (Length: 394)
Name: NF2562_high_18
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_18 |
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| [»] scaffold0205 (1 HSPs) |
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Alignment Details
Target: scaffold0205 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 22529 - 22151
Alignment:
| Q |
1 |
ttacataatttatatgtattttctcgactcaatgaaaccacctaactcaattaaataatttaaaggacatgtcgtgtaatttagccataagtaaaacaca |
100 |
Q |
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| T |
22529 |
ttacataatttatatgtattttctcgactcaatgaaaccacctaactcaattaaataatttaaaggacatgtgttgtaatttagccataaataaaacaca |
22430 |
T |
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| Q |
101 |
agatatgccatgtcgttttttgtactcgttaactaaagacataattttgtacagaccaaagttgtgtannnnnnngtaatagcaacatcaacaagctatt |
200 |
Q |
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| T |
22429 |
agatatgccatgttgctttttgtactcgttaactaaagacacaattttgtacagaccaaagttgtgtatttttatgtaatagcaacatcaacaagctatt |
22330 |
T |
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| Q |
201 |
tggttttacttcttgagttttacatgggcaatgcaacctgcaaccttttgcctaaatagttatatgagattcattaccacctcaatatataaatacaaaa |
300 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22329 |
tggttttacttattgagttttacatgggcaa-------tgcaaccttttgcctaaatagttatatgagattcattaccacctcaatatataaatacaaaa |
22237 |
T |
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| Q |
301 |
tagaatccttttgcctaaatagttagggctttggaatctcaggcaattataggtagtttcacaacaccaagaaatgctttcttctc |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
22236 |
tagaatccttttgcctaaatagttagggctttggaatctcaggcaattataggtagtttcacaacaccaacaaatgctttgttctc |
22151 |
T |
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