View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2562_high_19 (Length: 392)

Name: NF2562_high_19
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2562_high_19
NF2562_high_19
[»] chr7 (25 HSPs)
chr7 (169-387)||(927866-928094)
chr7 (148-208)||(23930210-23930270)
chr7 (147-201)||(2525851-2525905)
chr7 (146-199)||(4909151-4909204)
chr7 (157-210)||(27945030-27945083)
chr7 (149-189)||(7133287-7133327)
chr7 (147-199)||(38134413-38134465)
chr7 (151-199)||(41229309-41229357)
chr7 (142-210)||(43249982-43250050)
chr7 (171-218)||(31808540-31808586)
chr7 (152-199)||(48892856-48892903)
chr7 (170-208)||(17930454-17930492)
chr7 (143-201)||(25239706-25239764)
chr7 (142-192)||(29812666-29812716)
chr7 (168-210)||(30516385-30516427)
chr7 (147-188)||(18233605-18233646)
chr7 (157-210)||(26733293-26733346)
chr7 (173-210)||(30177037-30177074)
chr7 (157-210)||(32308109-32308162)
chr7 (148-192)||(5938479-5938523)
chr7 (147-207)||(21140989-21141049)
chr7 (147-199)||(23128668-23128720)
chr7 (155-199)||(30013195-30013239)
chr7 (155-199)||(35238199-35238243)
chr7 (147-207)||(38804562-38804622)
[»] chr5 (25 HSPs)
chr5 (34-192)||(18287945-18288103)
chr5 (137-206)||(31264431-31264500)
chr5 (147-210)||(26205767-26205830)
chr5 (146-206)||(23287355-23287415)
chr5 (170-205)||(39424635-39424670)
chr5 (173-210)||(9878065-9878102)
chr5 (147-208)||(28588681-28588742)
chr5 (142-210)||(5467980-5468048)
chr5 (154-206)||(11596469-11596521)
chr5 (153-200)||(2577193-2577240)
chr5 (133-192)||(18607090-18607149)
chr5 (142-221)||(21137667-21137746)
chr5 (168-207)||(28296320-28296359)
chr5 (148-218)||(3751938-3752007)
chr5 (168-210)||(9449458-9449500)
chr5 (141-207)||(25863196-25863262)
chr5 (134-192)||(37472591-37472649)
chr5 (142-200)||(39696001-39696059)
chr5 (168-210)||(41558711-41558753)
chr5 (150-208)||(42469212-42469270)
chr5 (142-192)||(43554528-43554578)
chr5 (170-207)||(2039879-2039916)
chr5 (154-199)||(4344742-4344787)
chr5 (157-218)||(24906318-24906379)
chr5 (153-221)||(41600876-41600944)
[»] chr4 (23 HSPs)
chr4 (143-221)||(34515877-34515955)
chr4 (133-201)||(31243541-31243609)
chr4 (148-215)||(20743286-20743353)
chr4 (150-207)||(7012058-7012115)
chr4 (164-206)||(54621805-54621847)
chr4 (146-199)||(18513247-18513300)
chr4 (142-207)||(24343499-24343564)
chr4 (147-199)||(7727966-7728018)
chr4 (147-199)||(14465301-14465353)
chr4 (146-198)||(19195168-19195220)
chr4 (154-206)||(21345547-21345599)
chr4 (148-204)||(55941011-55941067)
chr4 (148-207)||(5654599-5654658)
chr4 (170-208)||(4307051-4307089)
chr4 (147-201)||(25390893-25390947)
chr4 (142-192)||(32910558-32910608)
chr4 (148-210)||(36635313-36635375)
chr4 (173-207)||(47040264-47040298)
chr4 (148-198)||(50848311-50848361)
chr4 (146-214)||(22799899-22799968)
chr4 (157-201)||(23915127-23915171)
chr4 (148-196)||(36386219-36386267)
chr4 (162-206)||(53968539-53968583)
[»] chr6 (25 HSPs)
chr6 (157-218)||(15443676-15443737)
chr6 (142-206)||(12086347-12086411)
chr6 (142-192)||(34446572-34446622)
chr6 (146-207)||(9024182-9024243)
chr6 (168-202)||(4859141-4859175)
chr6 (142-192)||(12235521-12235571)
chr6 (173-210)||(7250996-7251033)
chr6 (169-210)||(10760870-10760911)
chr6 (147-216)||(19040335-19040404)
chr6 (142-191)||(30781296-30781345)
chr6 (142-206)||(6389736-6389800)
chr6 (151-207)||(7625114-7625170)
chr6 (157-216)||(13360389-13360448)
chr6 (147-210)||(13851725-13851788)
chr6 (168-206)||(17422283-17422321)
chr6 (150-192)||(19602191-19602233)
chr6 (157-210)||(5000643-5000696)
chr6 (154-207)||(13211295-13211348)
chr6 (148-192)||(7569176-7569220)
chr6 (142-210)||(17168465-17168533)
chr6 (146-210)||(17341670-17341734)
chr6 (164-208)||(20371134-20371178)
chr6 (170-210)||(32313393-32313433)
chr6 (170-210)||(33303648-33303688)
chr6 (146-198)||(34895040-34895092)
[»] chr8 (16 HSPs)
chr8 (142-200)||(40063950-40064008)
chr8 (142-210)||(28883880-28883948)
chr8 (149-192)||(30068037-30068080)
chr8 (168-210)||(14227211-14227253)
chr8 (174-210)||(11815818-11815854)
chr8 (147-207)||(34897077-34897137)
chr8 (142-210)||(44067505-44067573)
chr8 (148-207)||(9936806-9936865)
chr8 (155-210)||(27547984-27548039)
chr8 (142-204)||(1676707-1676769)
chr8 (168-206)||(2648276-2648314)
chr8 (142-200)||(13845233-13845291)
chr8 (142-192)||(35431142-35431192)
chr8 (153-207)||(37225756-37225810)
chr8 (142-192)||(39820436-39820486)
chr8 (146-191)||(3025559-3025604)
[»] chr2 (16 HSPs)
chr2 (147-200)||(10535766-10535819)
chr2 (170-210)||(12464879-12464919)
chr2 (142-192)||(25544488-25544538)
chr2 (147-192)||(24011043-24011088)
chr2 (154-207)||(30298461-30298514)
chr2 (147-192)||(34006998-34007043)
chr2 (147-199)||(4229415-4229467)
chr2 (148-192)||(12748691-12748735)
chr2 (155-199)||(18029580-18029624)
chr2 (146-198)||(18570973-18571025)
chr2 (142-189)||(11308006-11308053)
chr2 (147-182)||(30394474-30394509)
chr2 (142-192)||(23354654-23354704)
chr2 (142-192)||(23354997-23355047)
chr2 (146-192)||(23406875-23406921)
chr2 (168-208)||(44605167-44605207)
[»] chr3 (19 HSPs)
chr3 (151-207)||(25074781-25074837)
chr3 (147-210)||(20691308-20691371)
chr3 (168-207)||(41319338-41319377)
chr3 (113-192)||(52369782-52369861)
chr3 (142-192)||(3730167-3730217)
chr3 (147-191)||(1830351-1830395)
chr3 (142-210)||(24205043-24205111)
chr3 (141-193)||(25892466-25892518)
chr3 (155-218)||(10954933-10954996)
chr3 (157-208)||(11493378-11493429)
chr3 (168-207)||(46191373-46191412)
chr3 (142-192)||(12704659-12704709)
chr3 (147-201)||(34189425-34189479)
chr3 (142-207)||(15864825-15864890)
chr3 (155-192)||(21149074-21149111)
chr3 (169-210)||(26290360-26290401)
chr3 (151-200)||(28779561-28779610)
chr3 (173-210)||(52067085-52067122)
chr3 (147-207)||(13799496-13799556)
[»] chr1 (21 HSPs)
chr1 (147-210)||(2445859-2445922)
chr1 (147-210)||(36878450-36878513)
chr1 (154-212)||(3921654-3921712)
chr1 (169-207)||(39828263-39828301)
chr1 (153-210)||(609471-609528)
chr1 (157-218)||(34298417-34298478)
chr1 (143-192)||(40747776-40747825)
chr1 (142-218)||(6936402-6936478)
chr1 (142-210)||(22794080-22794148)
chr1 (148-192)||(42004955-42004999)
chr1 (147-210)||(398772-398835)
chr1 (162-221)||(2896143-2896202)
chr1 (147-210)||(17831538-17831601)
chr1 (168-210)||(10572617-10572659)
chr1 (147-199)||(11412775-11412827)
chr1 (162-210)||(16812532-16812580)
chr1 (168-200)||(17080909-17080941)
chr1 (147-207)||(19637760-19637820)
chr1 (166-198)||(33970959-33970991)
chr1 (162-198)||(42325561-42325597)
chr1 (137-201)||(45660767-45660830)
[»] scaffold0598 (1 HSPs)
scaffold0598 (150-207)||(8063-8120)
[»] scaffold0085 (1 HSPs)
scaffold0085 (168-208)||(26384-26424)
[»] scaffold0199 (1 HSPs)
scaffold0199 (142-204)||(1944-2006)
[»] scaffold0007 (1 HSPs)
scaffold0007 (168-210)||(225296-225338)
[»] scaffold0004 (1 HSPs)
scaffold0004 (157-210)||(92796-92849)
[»] scaffold0306 (1 HSPs)
scaffold0306 (162-210)||(13389-13437)
[»] scaffold0152 (1 HSPs)
scaffold0152 (162-210)||(21890-21938)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 7e-96; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 169 - 387
Target Start/End: Original strand, 927866 - 928094
Alignment:
Q  169 tatgtcattttctcaaattattattggtgtcgacgtgtcagttttcgtgttgtccaatgtcttgtccttatatgtgttcatgcttcataggtttcaactt 268  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  927866 tatgtcattttctcaaattattattagtgtcgacgtgtcagttttcgtgttgtccagtgtcttgtccttatatgtgttcgtgcttcataggtttcaactt 927965  T
Q  269 gtcc----------aacttctaccattggaagtaatcataattttttgaggaaatgttttaggtctagacattgtttggtgtgcctaatgtccttttagc 358  Q
    ||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  927966 gtccttttgcatgcaacttctaccattggaagtaatcataattttttgaggaaatgttttaggtctagacattgtttggtgtgcctaatgtccttttagc 928065  T
Q  359 catatagaatgtttggtgcttcatctcac 387  Q
    |||||||||||||||||||||| ||||||    
T  928066 catatagaatgtttggtgcttcttctcac 928094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 23930270 - 23930210
Alignment:
Q  148 acacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtca 208  Q
    ||||||||||||| ||||| ||||||||||||||||||||| |||  ||||||| ||||||    
T  23930270 acacctatgattacactgaattatgtcattttctcaaattactatccgtgtcgatgtgtca 23930210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 2525851 - 2525905
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcga 201  Q
    ||||| |||||||||| ||| ||||||||||| ||||||||||||| ||||||||    
T  2525851 gacacatatgattatattgaattatgtcatttgctcaaattattatcggtgtcga 2525905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 4909204 - 4909151
Alignment:
Q  146 tgacacctatgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    |||||| |||||||| | ||| |||||| |||||||||||||||||||||||||    
T  4909204 tgacacatatgattacaatgaattatgtaattttctcaaattattattggtgtc 4909151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 27945083 - 27945030
Alignment:
Q  157 attatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| ||||| |||||| ||||||||||||||||| |||||||| |||||||||    
T  27945083 attacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagt 27945030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 7133287 - 7133327
Alignment:
Q  149 cacctatgattatactgagttatgtcattttctcaaattat 189  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  7133287 cacctatgattacactgaattatgtcattttctcaaattat 7133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 38134413 - 38134465
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    ||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||    
T  38134413 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 41229309 - 41229357
Alignment:
Q  151 cctatgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    ||||||||||||| || ||||||||||||||||||||||| | ||||||    
T  41229309 cctatgattatacagaattatgtcattttctcaaattattgtcggtgtc 41229357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 43250050 - 43249982
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| ||||| ||| |||| ||||  |||||||||||||||||||||||||  |||||| |||||||||    
T  43250050 gacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagt 43249982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 31808540 - 31808586
Alignment:
Q  171 tgtcattttctcaaattattattggtgtcgacgtgtcagttttcgtgt 218  Q
    |||||||||||||||||||||| |||| |||||||||||| |||||||    
T  31808540 tgtcattttctcaaattattatcggtg-cgacgtgtcagtgttcgtgt 31808586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 48892903 - 48892856
Alignment:
Q  152 ctatgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    ||||||||||||||| ||| ||| ||||||||| ||||||||||||||    
T  48892903 ctatgattatactgaattacgtcgttttctcaatttattattggtgtc 48892856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 17930492 - 17930454
Alignment:
Q  170 atgtcattttctcaaattattattggtgtcgacgtgtca 208  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  17930492 atgtcattttcttaaattagtattggtgtcgacgtgtca 17930454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 25239706 - 25239764
Alignment:
Q  143 acatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcga 201  Q
    ||||||||||||| |||| ||||||||||   ||||||||||||||||||  |||||||    
T  25239706 acatgacacctataattacactgagttataaaattttctcaaattattatccgtgtcga 25239764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 29812666 - 29812716
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||| |||||||||||||| ||| | |||| ||||||||||||||||||||    
T  29812666 gacacgacacctatgattacactaaattatatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 30516385 - 30516427
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| |||||||||||||||||| || ||||||||||||||||    
T  30516385 ttatatcattttctcaaattattgttagtgtcgacgtgtcagt 30516427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 18233605 - 18233646
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaatta 188  Q
    ||||||||| |||| ||||| |||||||||||||||||||||    
T  18233605 gacacctataattacactgaattatgtcattttctcaaatta 18233646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 26733346 - 26733293
Alignment:
Q  157 attatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| ||||| |||||| ||||| |||||||||||  |||||||||||||||||    
T  26733346 attagactgaattatgtgattttgtcaaattattagcggtgtcgacgtgtcagt 26733293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 30177037 - 30177074
Alignment:
Q  173 tcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  30177037 tcattttctcaaattattactggtgttgacgtgtcagt 30177074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 32308162 - 32308109
Alignment:
Q  157 attatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| ||||| |||||| |||||||||||||||||  ||||||| |||||||||    
T  32308162 attacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagt 32308109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 5938523 - 5938479
Alignment:
Q  148 acacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||||||| |||||||||| |||||| ||||| ||||||||||||    
T  5938523 acacctataattatactgaattatgttattttatcaaattattat 5938479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 21140989 - 21141049
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||||||| || | ||||| |||| | ||||||| ||||||||| |||||||||||||||    
T  21140989 gacacctataatcacactgaattatatgattttcttaaattattagtggtgtcgacgtgtc 21141049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 23128668 - 23128720
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    ||||| |||||||| ||||| |||| |  ||||||||||||||||||||||||    
T  23128668 gacacatatgattacactgaattatatggttttctcaaattattattggtgtc 23128720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 30013239 - 30013195
Alignment:
Q  155 tgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    |||||||| ||| ||| |||||||||||| |||||||||||||||    
T  30013239 tgattatattgaattacgtcattttctcatattattattggtgtc 30013195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 35238199 - 35238243
Alignment:
Q  155 tgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    |||||||| ||| |||||||||||||||||| |||||| ||||||    
T  35238199 tgattatattgaattatgtcattttctcaaaatattatcggtgtc 35238243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 38804562 - 38804622
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||||||||||||  |||  |||||||||||||| ||||||||||  |||||| ||||||    
T  38804562 gacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcggcgtgtc 38804622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 18287945 - 18288103
Alignment:
Q  34 ttagagactgcctttacatttcatttgtattaatcaacgaagtacaaacattctttggattaggtgtatcgcggtttcagacacgcgtcgatgtttgata 133  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||  |||||||||| ||||| |||  |||||||||||||||||||||    
T  18287945 ttagagaccgcctttacatttcatttgtattgatcaacaaagtacagacattcttcagattaggtgtgtcgcgattttggacacgcgtcgatgtttgata 18288044  T
Q  134 ccaacattgacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18288045 ccaacattgacatgacacctatgattatactgagttaagtcattttctcaaattattat 18288103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 31264500 - 31264431
Alignment:
Q  137 acattgacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgt 206  Q
    ||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||| | ||||||| ||||    
T  31264500 acattgacacgacacttatgattacactgaattatgtcattttctcaaattattacttgtgtcgatgtgt 31264431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 26205767 - 26205830
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||||||||||||| ||||| |||||||||||||||||| | |||| ||| |||||||||||||    
T  26205767 gacacctatgattacactgaattatgtcattttctcaaaattttatcggtatcgacgtgtcagt 26205830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 23287355 - 23287415
Alignment:
Q  146 tgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgt 206  Q
    |||||| ||| |||||| ||| |||||||||||||  ||||||||||||||||||||||||    
T  23287355 tgacacatataattatattgaattatgtcattttcctaaattattattggtgtcgacgtgt 23287415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 39424670 - 39424635
Alignment:
Q  170 atgtcattttctcaaattattattggtgtcgacgtg 205  Q
    ||||||||||||||||||||||||||||||||||||    
T  39424670 atgtcattttctcaaattattattggtgtcgacgtg 39424635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 9878065 - 9878102
Alignment:
Q  173 tcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| |||||||||||||||||||||||||||||||||    
T  9878065 tcatattctcaaattattattggtgtcgacgtgtcagt 9878102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 28588681 - 28588742
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtca 208  Q
    ||||||||| |||| ||||| |||||| |||||||||||||||||  ||||||| |||||||    
T  28588681 gacacctataattacactgaattatgtgattttctcaaattattaccggtgtcggcgtgtca 28588742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 5467980 - 5468048
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| ||||||||| |||| ||||| |||||| ||||| |||||||||||| ||| | |||||||||||    
T  5467980 gacacgacacctataattacactgaattatgtgattttatcaaattattatcggtattgacgtgtcagt 5468048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 11596469 - 11596521
Alignment:
Q  154 atgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgt 206  Q
    ||||||| | ||| ||||||||||||||||||||||||| ||| |||||||||    
T  11596469 atgattacattgaattatgtcattttctcaaattattatcggtatcgacgtgt 11596521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 2577193 - 2577240
Alignment:
Q  153 tatgattatactgagttatgtcattttctcaaattattattggtgtcg 200  Q
    |||||||| ||| | ||||||||||||||||||||||||| |||||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtcg 2577240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 18607090 - 18607149
Alignment:
Q  133 accaacattgacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||||||  |||| |||||||||||||| | ||| |||||| ||||||||||||||||||    
T  18607090 accaacacagacacgacacctatgattacattgaattatgttattttctcaaattattat 18607149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 21137746 - 21137667
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttttcgtgttgt 221  Q
    |||| |||||||||||||  ||||| ||| |||||||||||| |||||||  | ||||| ||||||||| | ||||||||    
T  21137746 gacacgacacctatgatttcactgaattacgtcattttctcagattattaccgatgtcggcgtgtcagtgtccgtgttgt 21137667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 28296359 - 28296320
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  28296359 ttatgtcattttctcaaattattatcggtgtcgacttgtc 28296320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 3751938 - 3752007
Alignment:
Q  148 acacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttttcgtgt 218  Q
    |||| ||| |||||||| |||||||| ||||||||||||||||| | |||||||| ||| ||| |||||||    
T  3751938 acacatataattatacttagttatgtgattttctcaaattattagt-gtgtcgacttgttagtgttcgtgt 3752007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 9449500 - 9449458
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||||| |||||||||||||||||||||||||| |||| ||||    
T  9449500 ttatgtgattttctcaaattattattggtgtcggcgtgccagt 9449458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 25863262 - 25863196
Alignment:
Q  141 tgacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||| ||||| ||| |||| ||||| |||| ||||||||||||||||||||   ||||||||||||    
T  25863262 tgacacgacacttataattacactgaattatatcattttctcaaattattatacatgtcgacgtgtc 25863196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 37472591 - 37472649
Alignment:
Q  134 ccaacattgacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    ||||||| |||| ||||| ||||||||||  || ||||||||||||||| |||||||||    
T  37472591 ccaacatcgacacgacacatatgattatatcgaattatgtcattttctcgaattattat 37472649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 39696001 - 39696059
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcg 200  Q
    |||| |||||||||||||| ||| | |||| |||||||||||||||||| | |||||||    
T  39696001 gacacgacacctatgattacactaaattatatcattttctcaaattattgtcggtgtcg 39696059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 41558711 - 41558753
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||||||||||||||||||||||||| ||||| | ||||||||    
T  41558711 ttatgtcattttctcaaattattatttgtgtcaatgtgtcagt 41558753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 42469270 - 42469212
Alignment:
Q  150 acctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtca 208  Q
    ||||||||||| ||| |  ||||||||||||||||||||||||  |||||| |||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatccgtgtcggcgtgtca 42469212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 43554578 - 43554528
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||| |||||||||||||| ||| | |||| ||||||||||||||||||||    
T  43554578 gacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 2039879 - 2039916
Alignment:
Q  170 atgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  2039879 atgtcattttctcaaattattaccggtgtcgacgtgtc 2039916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 4344787 - 4344742
Alignment:
Q  154 atgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    ||||||| ||||| |||||||||||| |||||||||||| ||||||    
T  4344787 atgattacactgaattatgtcattttttcaaattattatcggtgtc 4344742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 24906318 - 24906379
Alignment:
Q  157 attatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttttcgtgt 218  Q
    |||| ||||| |||||||||||| ||||||||||||  |||| | ||||||||| |||||||    
T  24906318 attacactgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgttcgtgt 24906379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 41600944 - 41600876
Alignment:
Q  153 tatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttttcgtgttgt 221  Q
    |||||||||| ||| || ||| ||||||||||||||||||   ||| ||||||| ||| ||||||||||    
T  41600944 tatgattatattgaattgtgtaattttctcaaattattatcaatgttgacgtgttagtgttcgtgttgt 41600876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 34515877 - 34515955
Alignment:
Q  143 acatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttttcgtgttgt 221  Q
    |||||||||||||| ||| ||||| ||||||||||||||  |||||||||  |||||||||||||||| ||||||||||    
T  34515877 acatgacacctatgtttacactgaattatgtcattttcttgaattattatccgtgtcgacgtgtcagtgttcgtgttgt 34515955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 31243541 - 31243609
Alignment:
Q  133 accaacattgacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcga 201  Q
    |||||||  ||||||||||||||||||| ||||| |||||||||||||||||||||||||  |||||||    
T  31243541 accaacaccgacatgacacctatgattacactgaattatgtcattttctcaaattattataagtgtcga 31243609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 20743286 - 20743353
Alignment:
Q  148 acacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttttcg 215  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||  |||||| ||||||||| ||||    
T  20743286 acacctatgattacactgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgttcg 20743353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 7012115 - 7012058
Alignment:
Q  150 acctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||||||| | ||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  7012115 acctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgtgtc 7012058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 54621847 - 54621805
Alignment:
Q  164 tgagttatgtcattttctcaaattattattggtgtcgacgtgt 206  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  54621847 tgagttatgtcattttctcaaactattattggtgtcgatgtgt 54621805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 18513247 - 18513300
Alignment:
Q  146 tgacacctatgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    |||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||    
T  18513247 tgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 24343564 - 24343499
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    |||| ||||||||| |||| ||||| |||||| ||||||||||||||||||  |||||| ||||||    
T  24343564 gacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtc 24343499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 7727966 - 7728018
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    ||||||||| |||||||||| | ||||||||||||||| ||||||| ||||||    
T  7727966 gacacctataattatactgaatcatgtcattttctcaacttattatcggtgtc 7728018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 14465301 - 14465353
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    ||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||    
T  14465301 gacacatatgattaaattgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 19195168 - 19195220
Alignment:
Q  146 tgacacctatgattatactgagttatgtcattttctcaaattattattggtgt 198  Q
    |||||| | ||||||||| || ||| |||||||||||||||||||||||||||    
T  19195168 tgacacatgtgattataccgaattacgtcattttctcaaattattattggtgt 19195220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 21345547 - 21345599
Alignment:
Q  154 atgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgt 206  Q
    ||||||| | |||||||||| ||||| |||||||||||||||||| |||||||    
T  21345547 atgattacattgagttatgttattttttcaaattattattggtgttgacgtgt 21345599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 55941011 - 55941067
Alignment:
Q  148 acacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgt 204  Q
    |||| |||||||||||| | |||||| ||||||| |||||||||||||||| |||||    
T  55941011 acacatatgattatactaaattatgtaattttcttaaattattattggtgttgacgt 55941067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 5654599 - 5654658
Alignment:
Q  148 acacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    |||| |||||||| | ||| |||||||||||||||||||||||||  |||||||| ||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattattatcagtgtcgacatgtc 5654658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 4307089 - 4307051
Alignment:
Q  170 atgtcattttctcaaattattattggtgtcgacgtgtca 208  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  4307089 atgtaattttctcaaattattattggtgccgacgtgtca 4307051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 25390893 - 25390947
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcga 201  Q
    ||||| |||| ||||| ||| |||||||||||||| |||||||||||||| ||||    
T  25390893 gacacatatggttatattgaattatgtcattttctaaaattattattggtatcga 25390947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 32910608 - 32910558
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    ||||| ||||| || |||| ||||| |||||||||||||||||||||||||    
T  32910608 gacataacacccataattacactgaattatgtcattttctcaaattattat 32910558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 36635375 - 36635313
Alignment:
Q  148 acacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| ||| |||| ||||| |||||| ||||||||||||||||| |||||| | |||||||||    
T  36635375 acacatataattacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagt 36635313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 47040264 - 47040298
Alignment:
Q  173 tcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||||||||||||||| |||||||||||||||||    
T  47040264 tcattttctcaaattatcattggtgtcgacgtgtc 47040298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 50848311 - 50848361
Alignment:
Q  148 acacctatgattatactgagttatgtcattttctcaaattattattggtgt 198  Q
    ||||||| ||||| ||||| |||| ||||||| ||||||||||||||||||    
T  50848311 acacctacgattacactgaattatatcattttttcaaattattattggtgt 50848361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 22799899 - 22799968
Alignment:
Q  146 tgacacctatgattatactgagttatgtcattttctcaaa-ttattattggtgtcgacgtgtcagttttc 214  Q
    |||||| | |||||| | ||| |||||||||||||| ||| ||||| ||| |||||||||||||||||||    
T  22799899 tgacacgtgtgattacattgaattatgtcattttctaaaaattattcttgttgtcgacgtgtcagttttc 22799968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 23915171 - 23915127
Alignment:
Q  157 attatactgagttatgtcattttctcaaattattattggtgtcga 201  Q
    |||||| ||| |||||| |||||||||||| ||||||||||||||    
T  23915171 attatattgaattatgttattttctcaaatgattattggtgtcga 23915127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 36386219 - 36386267
Alignment:
Q  148 acacctatgattatactgagttatgtcattttctcaaattattattggt 196  Q
    |||||| | |||| ||||| ||||||| |||||||||||||||||||||    
T  36386219 acacctttaattacactgaattatgtccttttctcaaattattattggt 36386267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 53968583 - 53968539
Alignment:
Q  162 actgagttatgtcattttctcaaattattattggtgtcgacgtgt 206  Q
    ||||| |||||||||||||| |||||||||||||| ||| |||||    
T  53968583 actgaattatgtcattttcttaaattattattggtatcggcgtgt 53968539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 15443737 - 15443676
Alignment:
Q  157 attatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttttcgtgt 218  Q
    |||||| ||| |||||| |||||||||||||||||||| ||||||||||||||| |||||||    
T  15443737 attatattgaattatgttattttctcaaattattattgatgtcgacgtgtcagtgttcgtgt 15443676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 12086347 - 12086411
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgt 206  Q
    |||| |||||||||||||| ||||| |||||||||| ||||||||||||||  ||||||||||||    
T  12086347 gacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtcgacgtgt 12086411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 34446622 - 34446572
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||||||||    
T  34446622 gacacgacacctatgattacactgaattatgtcattttctcaaattattat 34446572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 9024182 - 9024243
Alignment:
Q  146 tgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    |||||| |||||||| | ||| |||||||||||||||||||||| ||| |||||||||||||    
T  9024182 tgacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtc 9024243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 202
Target Start/End: Original strand, 4859141 - 4859175
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgac 202  Q
    |||||||||||||||||||||||||||||||||||    
T  4859141 ttatgtcattttctcaaattattattggtgtcgac 4859175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 12235521 - 12235571
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||| |||||||||||||| ||||| ||||||||||||||| |||||||||    
T  12235521 gacacgacacctatgattacactgaattatgtcattttctctaattattat 12235571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 7250996 - 7251033
Alignment:
Q  173 tcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  7250996 tcattttctcaaattattattggtgtcaacgtgtcagt 7251033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 10760870 - 10760911
Alignment:
Q  169 tatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  10760870 tatgtcattttctcaaattattatcagtgtcgacgtgtcagt 10760911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 19040404 - 19040335
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttttcgt 216  Q
    ||||| ||| |||| ||||| |||||| |||||||||||||||||  ||||||| ||||||||| |||||    
T  19040404 gacacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtattcgt 19040335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 30781296 - 30781345
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattatta 191  Q
    ||||||||||||||||||| | | | ||||||||||||||||||||||||    
T  30781296 gacatgacacctatgattacaattaattatgtcattttctcaaattatta 30781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 6389800 - 6389736
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgt 206  Q
    |||| |||||||||||||| ||| | |||| ||||||||||||||||||||  |||||| |||||    
T  6389800 gacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgt 6389736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 7625170 - 7625114
Alignment:
Q  151 cctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||| |||||||| | |||| ||||||||||||||||||||  |||||||||||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgtgtcgacgtgtc 7625114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 13360389 - 13360448
Alignment:
Q  157 attatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttttcgt 216  Q
    |||| ||||| |||||| |||||||||||||| || ||||||||||||||| || |||||    
T  13360389 attacactgaattatgtgattttctcaaattactagtggtgtcgacgtgtctgtgttcgt 13360448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 13851788 - 13851725
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||| ||| |||| ||||| ||| || |||||||||||||||||  |||||||||||||||||    
T  13851788 gacacatataattacactgaattacgttattttctcaaattattagcggtgtcgacgtgtcagt 13851725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 17422283 - 17422321
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgacgtgt 206  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  17422283 ttatatcattttctcaaattattatcggtgtcgacgtgt 17422321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 19602191 - 19602233
Alignment:
Q  150 acctatgattatactgagttatgtcattttctcaaattattat 192  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||    
T  19602191 acctatgattacactgaattatatcattttctcaaattattat 19602233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 5000643 - 5000696
Alignment:
Q  157 attatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||||||||| | |||| |||||||| ||||||||  |||||||||||||||||    
T  5000643 attatactgaatcatgtgattttctcgaattattagcggtgtcgacgtgtcagt 5000696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 13211295 - 13211348
Alignment:
Q  154 atgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||||||| | | |||||||||||||||||||||||||   ||||||||||||    
T  13211295 atgattatattaaattatgtcattttctcaaattattatcaatgtcgacgtgtc 13211348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 7569176 - 7569220
Alignment:
Q  148 acacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||||||| |||| ||||| |||||| ||||||||||||||||||    
T  7569176 acacctataattacactgaattatgtaattttctcaaattattat 7569220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 17168465 - 17168533
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| ||||||||| |||| ||| | |||| ||||||||||||||||||||  |||| | |||||||||    
T  17168465 gacacgacacctattattacactaaattatatcattttctcaaattattatcagtgttggcgtgtcagt 17168533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 17341670 - 17341734
Alignment:
Q  146 tgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||||| ||| |||| ||||| |||||| ||||| |||||||||||  ||||||| |||||||||    
T  17341670 tgacacttataattacactgaattatgtgattttatcaaattattaacggtgtcggcgtgtcagt 17341734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 20371134 - 20371178
Alignment:
Q  164 tgagttatgtcattttctcaaattattattggtgtcgacgtgtca 208  Q
    |||||||||| |||||||||||||||||  ||||||| |||||||    
T  20371134 tgagttatgtgattttctcaaattattagcggtgtcggcgtgtca 20371178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 32313433 - 32313393
Alignment:
Q  170 atgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| |||||||||| ||||||||||||||| |||||||||    
T  32313433 atgttattttctcaacttattattggtgtcggcgtgtcagt 32313393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 33303688 - 33303648
Alignment:
Q  170 atgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||||||||| ||||||||||||| ||||||| ||||||||    
T  33303688 atgtcattttttcaaattattattagtgtcgatgtgtcagt 33303648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 34895040 - 34895092
Alignment:
Q  146 tgacacctatgattatactgagttatgtcattttctcaaattattattggtgt 198  Q
    ||||||||||||||| ||||| || | | |||||||||||||||||| |||||    
T  34895040 tgacacctatgattacactgaattgtataattttctcaaattattataggtgt 34895092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 40064008 - 40063950
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcg 200  Q
    |||| ||| |||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  40064008 gacacgacgcctatgattacaatgaattatgtcattttctcaaattattattggtgtcg 40063950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 28883880 - 28883948
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| |||||||||||||  ||||| |||||||||||||||||||||||||| ||| || | |||||||    
T  28883880 gacaagacacctatgattccactgaattatgtcattttctcaaattattattcgtggcggcatgtcagt 28883948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 30068037 - 30068080
Alignment:
Q  149 cacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  30068037 cacctacgattatactgaattatgtcattttctcaaattattat 30068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 14227253 - 14227211
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||||| |||||||||||||||||||||||| |||||||||||    
T  14227253 ttatgttattttctcaaattattattggtgttgacgtgtcagt 14227211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 11815854 - 11815818
Alignment:
Q  174 cattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||||||||||||||||||||||||| ||||||||||    
T  11815854 cattttctcaaattattattggtgtcaacgtgtcagt 11815818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 34897137 - 34897077
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||| ||| |||| ||||| |||||| |||||||||||||||||  ||||||||||||||    
T  34897137 gacacatataattacactgaattatgtgattttctcaaattattagcggtgtcgacgtgtc 34897077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 44067573 - 44067505
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| ||||| ||| |||| ||||  |||||||||||||||||||||||||  |||||| |||||||||    
T  44067573 gacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagt 44067505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 9936865 - 9936806
Alignment:
Q  148 acacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    |||| |||||||||| ||| |||| ||||||||| |||||||||| | ||||||||||||    
T  9936865 acacatatgattatattgaattatatcattttcttaaattattatcgatgtcgacgtgtc 9936806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 27548039 - 27547984
Alignment:
Q  155 tgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||||||| ||| |||||||||||||| |||| ||| | |||||||||||||||||    
T  27548039 tgattatattgacttatgtcattttctaaaatcattttcggtgtcgacgtgtcagt 27547984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 1676769 - 1676707
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgt 204  Q
    |||| |||||||||||||| ||| |  |||||||||||| |||||||||||  ||||||||||    
T  1676769 gacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtcgacgt 1676707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 2648276 - 2648314
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgacgtgt 206  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  2648276 ttatgttattttctcaaattattattggtgttgacgtgt 2648314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 13845291 - 13845233
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcg 200  Q
    |||| ||||||||||||||  || | |||| ||||||||||||||||||||| ||||||    
T  13845291 gacacgacacctatgattactctaaattatatcattttctcaaattattatttgtgtcg 13845233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 35431142 - 35431192
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||| |||||||||||||| ||| |  ||||||||||||||||||||||||    
T  35431142 gacacgacacctatgattacactaaaatatgtcattttctcaaattattat 35431192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 37225756 - 37225810
Alignment:
Q  153 tatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    |||||||| | ||| |||||| |||||||||||||||||||||||| ||| ||||    
T  37225756 tatgattacattgaattatgttattttctcaaattattattggtgtagacatgtc 37225810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 39820486 - 39820436
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||| |||||||||||||| ||| | |||| ||||||||||||||||||||    
T  39820486 gacacgacacctatgattacactaaattatatcattttctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 3025604 - 3025559
Alignment:
Q  146 tgacacctatgattatactgagttatgtcattttctcaaattatta 191  Q
    |||||||||| |||| ||||| |||||| |||||||||||||||||    
T  3025604 tgacacctataattacactgaattatgtgattttctcaaattatta 3025559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 10535766 - 10535819
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcg 200  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||| |||||||    
T  10535766 gacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcg 10535819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 12464879 - 12464919
Alignment:
Q  170 atgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  12464879 atgtcattttctcaaattattattggtgtcggcgtgtcagt 12464919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 25544538 - 25544488
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||| |||||||||||||| ||||| |||| ||||||||||||||||||||    
T  25544538 gacacgacacctatgattacactgaattatatcattttctcaaattattat 25544488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 24011088 - 24011043
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||    
T  24011088 gacacctatgattacactaaattatgtcattttctcaaattattat 24011043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 30298461 - 30298514
Alignment:
Q  154 atgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||||| ||||| |||||||||||| | |||||||||| ||||||||||||||    
T  30298461 atgattacactgaattatgtcattttattaaattattatcggtgtcgacgtgtc 30298514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 34006998 - 34007043
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||||    
T  34006998 gacacctatgattacactgaattatgtcaatttctcaaattattat 34007043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 4229415 - 4229467
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    ||||| |||||||| ||||| |||||||||| ||| |||||||||||||||||    
T  4229415 gacacatatgattacactgaattatgtcattctcttaaattattattggtgtc 4229467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 12748735 - 12748691
Alignment:
Q  148 acacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    ||||||||||||| |||||  ||||||||||||||||||||||||    
T  12748735 acacctatgattacactgaactatgtcattttctcaaattattat 12748691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 18029580 - 18029624
Alignment:
Q  155 tgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||    
T  18029580 tgattacagtgagttaagtcattttctcaaattattattggtgtc 18029624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 18571025 - 18570973
Alignment:
Q  146 tgacacctatgattatactgagttatgtcattttctcaaattattattggtgt 198  Q
    |||||| |||||||| | ||| ||||||||||||||||||||||||| |||||    
T  18571025 tgacacatatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 11308006 - 11308053
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattat 189  Q
    |||| |||||||||||||| ||||| |||||||||||| |||||||||    
T  11308006 gacacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 182
Target Start/End: Complemental strand, 30394509 - 30394474
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctc 182  Q
    |||||||||||||||||||| |||||||||||||||    
T  30394509 gacacctatgattatactgaattatgtcattttctc 30394474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 23354654 - 23354704
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||| |||||||||||||| ||| | |||| ||||||||||||||||||||    
T  23354654 gacacgacacctatgattacactaaattatatcattttctcaaattattat 23354704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 23354997 - 23355047
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    ||||||||||||||||||  ||| | |||| ||||||||||||||||||||    
T  23354997 gacatgacacctatgattgcactaaattatatcattttctcaaattattat 23355047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 23406921 - 23406875
Alignment:
Q  146 tgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||||||||||||||| |||| |||||| ||||||| ||||||||||    
T  23406921 tgacacctatgattattctgaattatgtaattttcttaaattattat 23406875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 44605167 - 44605207
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgacgtgtca 208  Q
    |||||| ||||||||||||||||||||| || |||||||||    
T  44605167 ttatgttattttctcaaattattattggcgttgacgtgtca 44605207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 25074837 - 25074781
Alignment:
Q  151 cctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    |||||||||| ||| | ||||||||||||||||||||||||| ||||||| ||||||    
T  25074837 cctatgattacactcaattatgtcattttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 20691371 - 20691308
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||  || || ||||||||||    
T  20691371 gacacatatgattacactgaattatgtcattttctcaaattattatcagtttctacgtgtcagt 20691308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 41319338 - 41319377
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  41319338 ttatgtcattttttcaaattattattggtgtcgacgtgtc 41319377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 52369861 - 52369782
Alignment:
Q  113 gacacgcgtcgatgtttgataccaacattgacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    ||||||||||| |||  |||||| |||  |||| |||||||||||||| | ||| |||||| ||||||||||||||||||    
T  52369861 gacacgcgtcggtgtccgataccgacaccgacacgacacctatgattacattgaattatgtaattttctcaaattattat 52369782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 3730167 - 3730217
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||| |||||||||||||| ||||| |||||||||| ||||||||||||||    
T  3730167 gacacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 1830395 - 1830351
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattatta 191  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||    
T  1830395 gacacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 24205043 - 24205111
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| ||||| ||| |||| ||||  |||||||||||||||||||||||||  |||||| |||||||||    
T  24205043 gacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagt 24205111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 25892518 - 25892466
Alignment:
Q  141 tgacatgacacctatgattatactgagttatgtcattttctcaaattattatt 193  Q
    ||||| |||||||||||||| ||||| |||| ||||||||| |||||||||||    
T  25892518 tgacacgacacctatgattacactgaattatatcattttcttaaattattatt 25892466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 10954996 - 10954933
Alignment:
Q  155 tgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttttcgtgt 218  Q
    |||||| ||||| |||||| ||||| ||||||||||| | |||||| ||||||||| |||||||    
T  10954996 tgattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgttcgtgt 10954933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 11493378 - 11493429
Alignment:
Q  157 attatactgagttatgtcattttctcaaattattattggtgtcgacgtgtca 208  Q
    |||| ||||| |||||| ||||||||| ||||||| ||||||||||||||||    
T  11493378 attacactgaattatgtgattttctcacattattagtggtgtcgacgtgtca 11493429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 46191373 - 46191412
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  46191373 ttatgtgattttctcaaattattattggtgtcgatgtgtc 46191412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 12704659 - 12704709
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    |||| |||||||||||||| | ||| |||||||||||| ||||||||||||    
T  12704659 gacacgacacctatgattacattgaattatgtcattttttcaaattattat 12704709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 34189479 - 34189425
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcga 201  Q
    |||||||| ||||| |||||  ||||||||||||||||||||||||  |||||||    
T  34189479 gacacctacgattacactgaaatatgtcattttctcaaattattatctgtgtcga 34189425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 15864890 - 15864825
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    |||| |||||||||||||| ||| | |||| ||||||| ||||||||||||  |||||| ||||||    
T  15864890 gacacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcggcgtgtc 15864825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 21149111 - 21149074
Alignment:
Q  155 tgattatactgagttatgtcattttctcaaattattat 192  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  21149111 tgattacactgaattatgtcattttctcaaattattat 21149074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 26290401 - 26290360
Alignment:
Q  169 tatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||| ||||||||||||||||| |||||||| |||||||||    
T  26290401 tatgtgattttctcaaattattaatggtgtcggcgtgtcagt 26290360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 28779610 - 28779561
Alignment:
Q  151 cctatgattatactgagttatgtcattttctcaaattattattggtgtcg 200  Q
    |||||||||| ||||| |||||||||||| |||  |||||||||||||||    
T  28779610 cctatgattacactgaattatgtcattttatcatgttattattggtgtcg 28779561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 52067122 - 52067085
Alignment:
Q  173 tcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  52067122 tcattttcttaaattattattggtatcgacgtgtcagt 52067085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 13799556 - 13799496
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||| ||| |||| ||| | |||||||||||||||||| |||||| |||||| |||||||    
T  13799556 gacacatattattacacttaattatgtcattttctcaaactattatcggtgtcaacgtgtc 13799496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 2445922 - 2445859
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||| |||||||| | ||| |||||||||||||||||||||| |||||||| || ||||||||    
T  2445922 gacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagt 2445859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 36878513 - 36878450
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||||||| |||| ||||| |||||| |||||||||||||||||  ||||||| |||||||||    
T  36878513 gacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagt 36878450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 3921712 - 3921654
Alignment:
Q  154 atgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttt 212  Q
    ||||||| | ||| ||||||||||||||||||||||||||| ||| |||||||| ||||    
T  3921712 atgattacattgaattatgtcattttctcaaattattattgatgttgacgtgtccgttt 3921654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 39828301 - 39828263
Alignment:
Q  169 tatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  39828301 tatgttattttctcaaattattattggtgtcgacgtgtc 39828263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 609471 - 609528
Alignment:
Q  153 tatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||||||||  ||| |||||| ||||||||||||||||| |||||||| |||||||||    
T  609471 tatgattatgttgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagt 609528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 34298478 - 34298417
Alignment:
Q  157 attatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttttcgtgt 218  Q
    |||| ||||| |||||| ||||||||||||||||| ||||||||  |||||||||| |||||    
T  34298478 attacactgaattatgtgattttctcaaattattagtggtgtcggtgtgtcagtttccgtgt 34298417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 40747776 - 40747825
Alignment:
Q  143 acatgacacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    ||||||||||||| |||| | ||| |||||||||||||||||||||||||    
T  40747776 acatgacacctataattacattgaattatgtcattttctcaaattattat 40747825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 6936402 - 6936478
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttttcgtgt 218  Q
    |||| |||||||||||||| ||| | |||||||||||||||| ||||||||  |||| || |||| ||| |||||||    
T  6936402 gacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgttgatgtgttagtgttcgtgt 6936478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 22794080 - 22794148
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| ||||||||| |||| ||||  |||||||||||| ||||||||||||  |||| |||||||||||    
T  22794080 gacacgacacctataattacactgtattatgtcattttttcaaattattatccgtgttgacgtgtcagt 22794148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 42004955 - 42004999
Alignment:
Q  148 acacctatgattatactgagttatgtcattttctcaaattattat 192  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||    
T  42004955 acacctatgattacactaaattatgtcattttctcaaattattat 42004999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 398772 - 398835
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||||||| |||| ||||| |||||| ||||| |||||||||||  ||||||| |||||||||    
T  398772 gacacctataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagt 398835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 2896143 - 2896202
Alignment:
Q  162 actgagttatgtcattttctcaaattattattggtgtcgacgtgtcagttttcgtgttgt 221  Q
    ||||| |||||| |||||||||||||||||  ||||||| ||||||||| | ||||||||    
T  2896143 actgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgt 2896202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 17831538 - 17831601
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||| |||||||| ||||| | |||| |||||||||||||||||  ||||||| |||||||||    
T  17831538 gacacatatgattacactgaataatgtgattttctcaaattattagcggtgtcggcgtgtcagt 17831601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 10572617 - 10572659
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||||| ||||||||||||||||| |||||||| |||||||||    
T  10572617 ttatgtgattttctcaaattattagtggtgtcggcgtgtcagt 10572659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 11412775 - 11412827
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtc 199  Q
    |||||||||||| | | ||| |||||||||||||||| |||||||| ||||||    
T  11412775 gacacctatgatcacattgaattatgtcattttctcatattattatcggtgtc 11412827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 16812580 - 16812532
Alignment:
Q  162 actgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||| |||||| ||||| ||||||||||||||||||||  ||||||||    
T  16812580 actgaattatgtgattttgtcaaattattattggtgtcggtgtgtcagt 16812532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 17080909 - 17080941
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcg 200  Q
    |||||| ||||||||||||||||||||||||||    
T  17080909 ttatgttattttctcaaattattattggtgtcg 17080941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 19637820 - 19637760
Alignment:
Q  147 gacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||| |||||||| | ||| | |||||||||||| |||||||||| |||||||| |||||    
T  19637820 gacacatatgattacattgaataatgtcattttcttaaattattatcggtgtcgatgtgtc 19637760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 33970991 - 33970959
Alignment:
Q  166 agttatgtcattttctcaaattattattggtgt 198  Q
    |||||||| ||||||||||||||||||||||||    
T  33970991 agttatgttattttctcaaattattattggtgt 33970959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 42325597 - 42325561
Alignment:
Q  162 actgagttatgtcattttctcaaattattattggtgt 198  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  42325597 actgaattatgtcattttctcaaattattatcggtgt 42325561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 45660767 - 45660830
Alignment:
Q  137 acattgacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcga 201  Q
    |||||||| ||| ||||||||||| | | | ||||| ||| ||||||||||||||||||||||||    
T  45660767 acattgac-tgatacctatgattacattcaattatgacatattctcaaattattattggtgtcga 45660830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 8063 - 8120
Alignment:
Q  150 acctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgtgtc 207  Q
    ||||||| ||| ||||| |||||||||||||||||||||||||  || ||||||||||    
T  8063 acctatgtttacactgaattatgtcattttctcaaattattatccgtatcgacgtgtc 8120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 26424 - 26384
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgacgtgtca 208  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  26424 ttatgtgattttctcaaattattagtggtgtcgacgtgtca 26384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 2006 - 1944
Alignment:
Q  142 gacatgacacctatgattatactgagttatgtcattttctcaaattattattggtgtcgacgt 204  Q
    |||| |||||||||||||| ||| |  |||||||||||| |||||||||||  ||||||||||    
T  2006 gacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtcgacgt 1944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 225296 - 225338
Alignment:
Q  168 ttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||||||||||||||||||||||||  |||||| |||||||||    
T  225296 ttatgtcattttctcaaattattatctgtgtcggcgtgtcagt 225338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 92849 - 92796
Alignment:
Q  157 attatactgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    |||| ||||| |||||| |||||||||||||||||  ||||||| |||||||||    
T  92849 attacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagt 92796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 13437 - 13389
Alignment:
Q  162 actgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||| |||||| ||||||||||||||||| | |||||| |||||||||    
T  13437 actgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagt 13389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 21890 - 21938
Alignment:
Q  162 actgagttatgtcattttctcaaattattattggtgtcgacgtgtcagt 210  Q
    ||||| |||||| ||||||||||||||||| | |||||| |||||||||    
T  21890 actgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagt 21938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University