View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2562_high_2 (Length: 921)

Name: NF2562_high_2
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2562_high_2
NF2562_high_2
[»] chr6 (17 HSPs)
chr6 (95-291)||(2986761-2986957)
chr6 (297-497)||(2987015-2987228)
chr6 (95-291)||(2928127-2928318)
chr6 (126-291)||(2935663-2935828)
chr6 (99-256)||(2952983-2953140)
chr6 (297-497)||(2985959-2986155)
chr6 (1-93)||(3002848-3002952)
chr6 (1-53)||(2954975-2955027)
chr6 (154-203)||(2955324-2955373)
chr6 (1-53)||(2952843-2952895)
chr6 (99-171)||(2955220-2955292)
chr6 (1-53)||(2974892-2974944)
chr6 (1-53)||(2986620-2986672)
chr6 (12-53)||(2935508-2935549)
chr6 (92-137)||(3002775-3002820)
chr6 (159-261)||(2985775-2985878)
chr6 (14-51)||(2983761-2983798)
[»] scaffold0024 (4 HSPs)
scaffold0024 (92-289)||(43204-43401)
scaffold0024 (99-200)||(33991-34092)
scaffold0024 (297-384)||(33739-33829)
scaffold0024 (297-346)||(43082-43131)
[»] chr7 (3 HSPs)
chr7 (125-291)||(3340056-3340223)
chr7 (12-53)||(3339900-3339941)
chr7 (363-397)||(3340362-3340396)
[»] chr8 (2 HSPs)
chr8 (740-830)||(37201067-37201157)
chr8 (258-288)||(7473110-7473140)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 3e-66; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 95 - 291
Target Start/End: Original strand, 2986761 - 2986957
Alignment:
Q  95 tgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttga 194  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| ||||||    
T  2986761 tgagtttaatgtaacatgatttatgttttgataccttaattgaaaagtgatttatcattattcaagttgtttggataatttaaatcaaaattatttttga 2986860  T
Q  195 gtgtgaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgatta 291  Q
     |||||||| |   || |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  2986861 atgtgaattgacgaaatttagtttatataattgaaaaagaagaggaacatcgataaaataagagagtgcaacacttgagtaaatggtaaatttatta 2986957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 297 - 497
Target Start/End: Original strand, 2987015 - 2987228
Alignment:
Q  297 tccaaccttgaatcgattttcgaacaacaatcacttaaaattatttagagtttccac-gacaagttgatttagtacataactcacgtttgatcttgtgaa 395  Q
    |||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  2987015 tccaaccttgaatcgaatttggaacaacaatcacttaaaattattaacagtttccattgacaagttgatttagtacataactcacgtttgatcttgtgaa 2987114  T
Q  396 cttacgtcgcatgtcttccaac-------tcacaaccaaaaaagcaccacattaatta-----tttttatcatatatccctacatttatgctctcactct 483  Q
    ||||||||   |||||||||||       |||||||||||||||||| ||||||||||     |||||| ||||||||| ||||||||||||||||| ||    
T  2987115 cttacgtcaagtgtcttccaactcacaagtcacaaccaaaaaagcacgacattaattattatttttttaccatatatccttacatttatgctctcaccct 2987214  T
Q  484 ccattttacttaaa 497  Q
    ||||||||||||||    
T  2987215 ccattttacttaaa 2987228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 95 - 291
Target Start/End: Original strand, 2928127 - 2928318
Alignment:
Q  95 tgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttga 194  Q
    |||||||||  ||| |||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||    
T  2928127 tgagtttaagttaaggtgacttatgttttgataccttgattgaaaagtgatttttcataattcaagttgtttagataatttagatcaaaattacttttga 2928226  T
Q  195 gtgtgaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgatta 291  Q
    ||||||||| |   ||| | |||| ||||||| |||||||||||| || |  | ||||||||||||||     ||||||||||||||||||||||||    
T  2928227 gtgtgaatttaccaaaactggtttgaatgattaaaaaagaagaggcacgttaataaaataagagagtg-----cttgagtaaatggtaaattgatta 2928318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 126 - 291
Target Start/End: Original strand, 2935663 - 2935828
Alignment:
Q  126 taccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgtgaattaatacaaattagtttaaatgat 225  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||  |||||| |||||||| ||  |||   |||| ||||||    
T  2935663 taccttgattgaaaagtgatttttcataattcatgttgtttggataatttagatcaaaattgtttttgaatgtgaatttatcaaaacgcgtttgaatgat 2935762  T
Q  226 tgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgatta 291  Q
    | ||||||||||||||| || | ||||||||| | || ||||||||| ||||||||||||||||||    
T  2935763 taaaaaagaagaggaacgtcaataaaataagacaatgaaacacttgactaaatggtaaattgatta 2935828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 99 - 256
Target Start/End: Original strand, 2952983 - 2953140
Alignment:
Q  99 tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgt 198  Q
    ||||||||| | ||||||||| ||  ||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| || ||    
T  2952983 tttaatgtatcatgatttatgtttggatatcttgattgaaaagtgatttttcataattcaagttgtttggagaatttagatcaaaattacttttaagagt 2953082  T
Q  199 gaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataag 256  Q
    ||||| ||  ||| |||||| ||||||| |||||||||||||||||| | ||||||||    
T  2953083 gaatttatcaaaactagtttgaatgattaaaaaagaagaggaacatccataaaataag 2953140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 297 - 497
Target Start/End: Original strand, 2985959 - 2986155
Alignment:
Q  297 tccaaccttgaatcgattttcgaacaacaatcacttaaaattatttagagtttccacgacaagttgatttagtacataactcacgtttgatcttgtgaac 396  Q
    ||||||||| |||| | ||| ||||||||||||| |||||||| |||||||  |||  |||| ||||||||| ||||||||| ||||||| | | |||||    
T  2985959 tccaaccttaaatccagtttggaacaacaatcacataaaattagttagagtccccaa-acaatttgatttagaacataactctcgtttgaccctatgaac 2986057  T
Q  397 ttacgtcgcatgtcttccaactcacaaccaaaaaagcaccacattaattatttttatcatatatccctacatttatgctctcactc-tccattttactta 495  Q
    |||||||   || ||||||||||||||||||| |||||| ||    ||  ||||| ||||||| ||||||||||||  |||||||| |||||||||||||    
T  2986058 ttacgtcaagtgccttccaactcacaaccaaacaagcacgac----atcttttttttcatatacccctacatttatagtctcactcttccattttactta 2986153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3002952 - 3002848
Alignment:
Q  1 gatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaat------------gtgtgtttggttccacggtgataataattgtttttga 88  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||            ||| |||||||||||||||||||| ||||||||||||    
T  3002952 gatagtgtggttggcaaaatctaggggtgcaggtagaaacttcaaactaatgtcgtgtctcgcgtgcgtttggttccacggtgataacaattgtttttga 3002853  T
Q  89 atgaa 93  Q
    |||||    
T  3002852 atgaa 3002848  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2954975 - 2955027
Alignment:
Q  1 gatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 53  Q
    |||||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  2954975 gatagtgtggttggcaaaatctagggttgcaggtagaaactcctaactaatgt 2955027  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 2955324 - 2955373
Alignment:
Q  154 attcaagttgtttggataatttagatccaaattacttttgagtgtgaatt 203  Q
    ||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  2955324 attcaagttgtttggataatttagatcaaaattacttctgaatgtgaatt 2955373  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2952843 - 2952895
Alignment:
Q  1 gatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 53  Q
    |||||||| | |||||||||||||||||||||||||||| ||| |||||||||    
T  2952843 gatagtgttgttggcaaaatctaggggtgcaggtagaaattcctaactaatgt 2952895  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 2955220 - 2955292
Alignment:
Q  99 tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggata 171  Q
    ||||||||||| | ||||||| |   |||||||||||||||||||||||||||| ||||||||  ||||||||    
T  2955220 tttaatgtaacataatttatgttaggataccttaattgaaaagtgatttttcataattcaagtgttttggata 2955292  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2974892 - 2974944
Alignment:
Q  1 gatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 53  Q
    |||||||| | ||| |||||||||||||||||||||||||||| |||||||||    
T  2974892 gatagtgttgttggaaaaatctaggggtgcaggtagaaactcctaactaatgt 2974944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2986620 - 2986672
Alignment:
Q  1 gatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 53  Q
    |||||||||| ||||||||||||||||||||  |||||||||| |||||||||    
T  2986620 gatagtgtggttggcaaaatctaggggtgcaactagaaactcctaactaatgt 2986672  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 2935508 - 2935549
Alignment:
Q  12 tggcaaaatctaggggtgcaggtagaaactccaaactaatgt 53  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  2935508 tggcaaaatctaggggtgcaggtagaaactcataactaatgt 2935549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 3002820 - 3002775
Alignment:
Q  92 aaatgagtttaatgtaacgtgatttatgatttaataccttaattga 137  Q
    ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  3002820 aaatgagtttagtgtaacatgatttatgttttaataccttaattga 3002775  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 261
Target Start/End: Original strand, 2985775 - 2985878
Alignment:
Q  159 agttgtttggataatttagatccaaattacttttgagtgtgaattaatacaaattagtttaaatgattgaaaa-agaagaggaacatcgacaaaataaga 257  Q
    |||||||||| ||||||| ||| |||||||| ||||||||| ||| |   ||| |||||| ||||||| |||| ||||||||| |||| |  ||||||||    
T  2985775 agttgtttgggtaatttaaatcgaaattactcttgagtgtgcatttaccaaaactagtttgaatgattaaaaaaagaagaggagcatcaatcaaataaga 2985874  T
Q  258 gagt 261  Q
    ||||    
T  2985875 gagt 2985878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 2983761 - 2983798
Alignment:
Q  14 gcaaaatctaggggtgcaggtagaaactccaaactaat 51  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  2983761 gcaaaatctaggggtgcaggtaaaaactcctaactaat 2983798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 106; Significance: 1e-52; HSPs: 4)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 92 - 289
Target Start/End: Complemental strand, 43401 - 43204
Alignment:
Q  92 aaatgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttt 191  Q
    |||||| |||||| |||  ||||||||| || |||| ||| |||||||| ||||||||||| |||||||||||||||||||||| |||| |||| |||||    
T  43401 aaatgactttaatataatatgatttatgtttgaatatcttgattgaaaaatgatttttcataattcaagttgtttggataattttgatcgaaatgacttt 43302  T
Q  192 tgagtgtgaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgat 289  Q
    | |||||||||| ||  ||| |||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||    
T  43301 taagtgtgaatttatcaaaactagtttgaatgattgaaaaagaagaggaacatcaataaaataagagactgcaacacttgagtaaatggtgaattgat 43204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 34092 - 33991
Alignment:
Q  99 tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgt 198  Q
    ||||||||||| ||||||||  ||  ||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||    
T  34092 tttaatgtaacatgatttatatttggatagcttgattgaaaagtgatttttcataattcaagttatttggataatttagatcaaaattacttttgagtgt 33993  T
Q  199 ga 200  Q
    ||    
T  33992 ga 33991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 297 - 384
Target Start/End: Complemental strand, 33829 - 33739
Alignment:
Q  297 tccaaccttgaatcgattttcgaacaacaatcacttaaaattatttagagtttccacgacaagttgattt----agtacataactcacgttt 384  Q
    ||||||||| |||||||||| ||||||||||||| |||||| ||  ||||  ||||  ||||||||||||    ||||||||||||||||||    
T  33829 tccaaccttaaatcgattttggaacaacaatcacgtaaaatgataaagagcatcca-aacaagttgatttattaagtacataactcacgttt 33739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 43131 - 43082
Alignment:
Q  297 tccaaccttgaatcgattttcgaacaacaatcacttaaaattatttagag 346  Q
    ||||||||| ||| |||||| ||||||||||||| |||||||||| ||||    
T  43131 tccaaccttaaattgattttggaacaacaatcacataaaattattaagag 43082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 125 - 291
Target Start/End: Original strand, 3340056 - 3340223
Alignment:
Q  125 ataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgtgaattaatacaaattagtttaaatga 224  Q
    ||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||| ||  ||| | |||| |||||    
T  3340056 ataccttgattgaaaagtaaattttcataattcaagttgtttggataatttagattaaaattacttttgagtgtgaatttatcaaaactggttttaatga 3340155  T
Q  225 tt-gaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgatta 291  Q
    ||  |||||||| |||||| || | |||||||||||||||||||||||| |||||| |||||||||||    
T  3340156 ttaaaaaaagaaaaggaacgtcaataaaataagagagtgcaacacttgactaaatgataaattgatta 3340223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 3339900 - 3339941
Alignment:
Q  12 tggcaaaatctaggggtgcaggtagaaactccaaactaatgt 53  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  3339900 tggcaaaatctaggggtgcatgtagaaactcctaactaatgt 3339941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 363 - 397
Target Start/End: Original strand, 3340362 - 3340396
Alignment:
Q  363 atttagtacataactcacgtttgatcttgtgaact 397  Q
    |||||||||||||||||||||||||| ||||||||    
T  3340362 atttagtacataactcacgtttgatcatgtgaact 3340396  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 740 - 830
Target Start/End: Complemental strand, 37201157 - 37201067
Alignment:
Q  740 taattccctctacattgtcagtgttagttaggcggcttttccttaataagctttattctaaggataatcttagcaaaagaggcgtttattt 830  Q
    |||||||||||| |||||  ||||||||| ||| |||||||| ||||| ||||  ||||||||| ||||||||||||||||  ||||||||    
T  37201157 taattccctctaaattgtttgtgttagtttggcagcttttccataataggcttccttctaaggaaaatcttagcaaaagagaggtttattt 37201067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 258 - 288
Target Start/End: Original strand, 7473110 - 7473140
Alignment:
Q  258 gagtgcaacacttgagtaaatggtaaattga 288  Q
    |||||||||||||||||||||||||||||||    
T  7473110 gagtgcaacacttgagtaaatggtaaattga 7473140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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