View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2562_high_22 (Length: 379)

Name: NF2562_high_22
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2562_high_22
NF2562_high_22
[»] chr7 (16 HSPs)
chr7 (108-310)||(38996059-38996261)
chr7 (316-379)||(27456234-27456299)
chr7 (315-379)||(29993608-29993675)
chr7 (317-377)||(34606261-34606324)
chr7 (318-379)||(28587911-28587974)
chr7 (317-379)||(8754706-8754771)
chr7 (320-379)||(11686445-11686507)
chr7 (315-379)||(24798524-24798590)
chr7 (315-377)||(34333282-34333347)
chr7 (317-374)||(13065003-13065061)
chr7 (345-379)||(47083086-47083120)
chr7 (316-379)||(47839492-47839557)
chr7 (315-379)||(4628564-4628631)
chr7 (315-379)||(12218557-12218624)
chr7 (342-379)||(30810683-30810720)
chr7 (315-379)||(34546435-34546502)
[»] scaffold0014 (1 HSPs)
scaffold0014 (315-379)||(68411-68478)
[»] chr2 (11 HSPs)
chr2 (315-379)||(30486208-30486275)
chr2 (315-379)||(561639-561706)
chr2 (316-379)||(1859161-1859227)
chr2 (317-377)||(20552931-20552994)
chr2 (342-379)||(22567630-22567667)
chr2 (315-379)||(31390010-31390077)
chr2 (319-374)||(13574155-13574211)
chr2 (344-379)||(22887780-22887815)
chr2 (310-379)||(22068440-22068512)
chr2 (315-379)||(4022600-4022666)
chr2 (316-379)||(32360990-32361056)
[»] chr6 (17 HSPs)
chr6 (315-379)||(18276736-18276802)
chr6 (316-379)||(29451236-29451301)
chr6 (313-379)||(1391299-1391367)
chr6 (315-379)||(3026130-3026195)
chr6 (315-379)||(20897946-20898013)
chr6 (315-377)||(23402136-23402201)
chr6 (317-379)||(35043890-35043955)
chr6 (315-379)||(3515764-3515831)
chr6 (315-379)||(12525717-12525784)
chr6 (316-379)||(13529454-13529520)
chr6 (316-379)||(27433491-27433557)
chr6 (335-379)||(34477671-34477715)
chr6 (317-379)||(392096-392161)
chr6 (315-377)||(7851282-7851347)
chr6 (317-379)||(21878468-21878533)
chr6 (344-379)||(25165534-25165569)
chr6 (342-379)||(2350680-2350717)
[»] chr8 (23 HSPs)
chr8 (316-379)||(12203854-12203919)
chr8 (316-379)||(12448282-12448347)
chr8 (315-379)||(33357250-33357317)
chr8 (316-379)||(11112638-11112704)
chr8 (315-375)||(16785085-16785147)
chr8 (315-379)||(9063173-9063239)
chr8 (317-377)||(34228682-34228745)
chr8 (339-379)||(9537945-9537985)
chr8 (318-379)||(16888665-16888728)
chr8 (315-379)||(4648193-4648259)
chr8 (317-379)||(12652630-12652695)
chr8 (313-379)||(27988620-27988689)
chr8 (313-379)||(28045922-28045991)
chr8 (317-379)||(30675693-30675758)
chr8 (316-379)||(36730444-36730509)
chr8 (313-379)||(40831277-40831342)
chr8 (315-379)||(168464-168531)
chr8 (315-379)||(13643010-13643077)
chr8 (315-379)||(13743435-13743502)
chr8 (342-379)||(20831674-20831711)
chr8 (317-379)||(37373206-37373270)
chr8 (342-379)||(42035102-42035139)
chr8 (318-375)||(21595848-21595907)
[»] chr3 (13 HSPs)
chr3 (320-379)||(41554061-41554122)
chr3 (316-379)||(272219-272285)
chr3 (315-379)||(18014670-18014737)
chr3 (315-379)||(46352632-46352699)
chr3 (317-377)||(48725271-48725334)
chr3 (315-379)||(52520679-52520746)
chr3 (316-379)||(49893330-49893396)
chr3 (317-376)||(52246582-52246644)
chr3 (317-379)||(28139309-28139374)
chr3 (317-379)||(39074419-39074484)
chr3 (314-379)||(40362701-40362769)
chr3 (315-379)||(13159895-13159962)
chr3 (342-379)||(52718195-52718232)
[»] chr1 (14 HSPs)
chr1 (317-379)||(17333403-17333467)
chr1 (316-379)||(29657770-29657836)
chr1 (317-379)||(3097659-3097724)
chr1 (315-377)||(15227737-15227802)
chr1 (342-379)||(3784834-3784871)
chr1 (315-379)||(30657606-30657673)
chr1 (315-379)||(35700771-35700836)
chr1 (315-379)||(42770111-42770178)
chr1 (342-379)||(47010021-47010058)
chr1 (338-379)||(51368906-51368947)
chr1 (339-379)||(15282635-15282675)
chr1 (318-379)||(19011117-19011180)
chr1 (316-379)||(29210412-29210478)
chr1 (315-379)||(51065869-51065936)
[»] scaffold0206 (1 HSPs)
scaffold0206 (316-379)||(11091-11155)
[»] chr4 (15 HSPs)
chr4 (318-379)||(19503226-19503289)
chr4 (317-379)||(32217045-32217110)
chr4 (315-379)||(12356242-12356309)
chr4 (315-379)||(15186241-15186308)
chr4 (342-379)||(24679763-24679800)
chr4 (317-379)||(28755621-28755685)
chr4 (315-379)||(29591187-29591254)
chr4 (316-379)||(18068000-18068066)
chr4 (317-379)||(54054548-54054613)
chr4 (317-379)||(54897308-54897373)
chr4 (315-379)||(789651-789718)
chr4 (338-379)||(4220219-4220260)
chr4 (315-379)||(43944505-43944572)
chr4 (315-379)||(47231993-47232060)
chr4 (316-379)||(4268943-4269009)
[»] chr5 (8 HSPs)
chr5 (317-379)||(10069969-10070034)
chr5 (315-379)||(13661806-13661873)
chr5 (317-379)||(34650954-34651018)
chr5 (315-379)||(35132520-35132587)
chr5 (315-379)||(13470149-13470216)
chr5 (342-379)||(19647779-19647816)
chr5 (315-374)||(10054478-10054540)
chr5 (342-374)||(39067062-39067094)
[»] scaffold0674 (1 HSPs)
scaffold0674 (335-379)||(8018-8062)
[»] scaffold0549 (1 HSPs)
scaffold0549 (335-379)||(7309-7353)
[»] scaffold0003 (1 HSPs)
scaffold0003 (316-379)||(53806-53872)
[»] scaffold0264 (1 HSPs)
scaffold0264 (315-377)||(22959-23024)
[»] scaffold0188 (1 HSPs)
scaffold0188 (318-379)||(6231-6295)
[»] scaffold0002 (1 HSPs)
scaffold0002 (315-379)||(147026-147093)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 108 - 310
Target Start/End: Complemental strand, 38996261 - 38996059
Alignment:
Q  108 agaatggaagatactttgttttgtttgaagaatatggttgcattgcattaatgggtgaagttggagtttcgttactttacgcggtaaagatggaacctgg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38996261 agaatggaagatactttgttttgtttgaagaatatggttgcattgcattaatgggtgaagttggagtttcgttactttacgcggtaaagatggaacctgg 38996162  T
Q  208 tgtcggtggcagggaattgcattcgctaggacaactagttgtacatctcatccgtttaatctcaaagatcgtttgtgggatattttgtagagaaatgata 307  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38996161 tgtcggtggcagggaattgcattcgcaaggacaactagttgtacatctaatccgtttaatctcaaagatcgtttgtgggatattttgtagagaaatgata 38996062  T
Q  308 ttt 310  Q
    |||    
T  38996061 ttt 38996059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 27456299 - 27456234
Alignment:
Q  316 agggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||||||||||  ||| ||||||||||||| || |||||||||||||||||||||    
T  27456299 agggaaatgctaactggtgcccccgggcactggttaaggatatggaaaaagaaattatatagtagt 27456234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 29993675 - 29993608
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||   ||| || |||||||||| ||||||| ||||||||||||||||    
T  29993675 aagggaaatgctaacgggtgcccccggggcaccggttaaggatatgaaaaaggaaattatatagtagt 29993608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 34606261 - 34606324
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagta 377  Q
    ||||||||||||||||||||    ||| ||||||||||||| ||||||| ||||||||||||||    
T  34606261 gggaaatgctaactggtgcctccggggcactggttaaggatatgaaaaaggaaattatatagta 34606324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 28587911 - 28587974
Alignment:
Q  318 ggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||| |||||||  ||  ||||||||||||| ||||||| ||||||||||||||||    
T  28587911 ggaaatgctaaccggtgcccccggacactggttaaggatatgaaaaaggaaattatatagtagt 28587974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 8754771 - 8754706
Alignment:
Q  317 gggaaatgctaactggtgcccgggta---ctggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| ||||||| || |   |||||||||||| ||||||| ||||||||||||||||    
T  8754771 gggaaatgctaaccggtgccctgggagcactggttaaggatatgaaaaatgaaattatatagtagt 8754706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 11686507 - 11686445
Alignment:
Q  320 aaatgctaactggtgc--ccggg-tactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||||  ||||| |||||||||||||| | ||||| ||||||||||||||||    
T  11686507 aaatgctaactggtgcttccgggatactggttaaggatataaaaaaggaaattatatagtagt 11686445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 24798590 - 24798524
Alignment:
Q  315 aagggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||  ||| ||| ||| ||||| ||||||| ||||||||||||||||    
T  24798590 aagggaaatgctaaccggtgcccccgggcacttgttgaggatatgaaaaaggaaattatatagtagt 24798524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 34333282 - 34333347
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagta 377  Q
    ||||||||||||||| |||||||   ||| ||||||||||| | ||||||| ||||||||||||||    
T  34333282 aagggaaatgctaaccggtgcccccggggcactggttaagggtatgaaaaaggaaattatatagta 34333347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 13065061 - 13065003
Alignment:
Q  317 gggaaatgctaactggtgcccg-ggtactggttaaggatctgaaaaaagaaattatata 374  Q
    ||||||||||||| |||||||  |||| ||||||||||| ||||||| |||||||||||    
T  13065061 gggaaatgctaaccggtgcccacggtattggttaaggatatgaaaaaggaaattatata 13065003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 345 - 379
Target Start/End: Original strand, 47083086 - 47083120
Alignment:
Q  345 ggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||| ||||||||||||||||||||||||    
T  47083086 ggttaaggatatgaaaaaagaaattatatagtagt 47083120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 47839492 - 47839557
Alignment:
Q  316 agggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||| |||| ||  ||||||||||||||||| ||||||| ||| ||||||| ||||    
T  47839492 agggaaatgctaaccggtgtcccggggtactggttaaggatatgaaaaaggaatttatataatagt 47839557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 4628564 - 4628631
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| | |||||   ||| || |||||||||| ||||||| ||||||||||||||||    
T  4628564 aagggaaatgctaaccgatgcccctggggcaccggttaaggatatgaaaaaggaaattatatagtagt 4628631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 12218624 - 12218557
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||   ||| ||||| |||| || ||||||| ||||||||||||||||    
T  12218624 aagggaaatgctaaccggtgcccccggggcactggataagtatatgaaaaaggaaattatatagtagt 12218557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 30810683 - 30810720
Alignment:
Q  342 actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  30810683 actggttaaggatatgaaaaaggaaattatatagtagt 30810720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 34546502 - 34546435
Alignment:
Q  315 aagggaaatgctaactggtgcccg---ggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| | |||||    ||||| |||||||||| ||||||| ||||||||||||||||    
T  34546502 aagggaaatgctaaccgatgcccccgaggtaccggttaaggatatgaaaaaggaaattatatagtagt 34546435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 68478 - 68411
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||||||||||   ||| ||||||||||||| ||||||| ||||||||||||||||    
T  68478 aagggaaatgctaactggtgcccccggggcactggttaaggatatgaaaaatgaaattatatagtagt 68411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 30486208 - 30486275
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||||||||||   ||| ||||||||||||| ||||||| ||||||||||||||||    
T  30486208 aagggaaatgctaactggtgcccccggggcactggttaaggatatgaaaaaggaaattatatagtagt 30486275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 561706 - 561639
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||   ||| ||||||||||||| ||||||| ||||||||||||||||    
T  561706 aagggaaatgctaaccggtgcccccggggcactggttaaggatatgaaaaaggaaattatatagtagt 561639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 1859161 - 1859227
Alignment:
Q  316 agggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||||||||||   ||||| ||||||||||| | |||||||||||| |||||||||    
T  1859161 agggaaatgctaactggtgcccccggggtaatggttaaggatataaaaaaagaaattgtatagtagt 1859227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 20552931 - 20552994
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagta 377  Q
    ||||||||||||| |||||||   ||| ||||||||||||| ||||||| ||||||||||||||    
T  20552931 gggaaatgctaaccggtgccccgggggcactggttaaggatatgaaaaaggaaattatatagta 20552994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 22567630 - 22567667
Alignment:
Q  342 actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  22567630 actggttaaggatatgaaaaaagaaattatatagtagt 22567667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 31390010 - 31390077
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||||||||||    ||| ||| ||||||||| ||||||| ||||||||||||||||    
T  31390010 aagggaaatgctaactggtgcctccggggcactagttaaggatatgaaaaaggaaattatatagtagt 31390077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 13574211 - 13574155
Alignment:
Q  319 gaaatgctaactggtgccc-gggtactggttaaggatctgaaaaaagaaattatata 374  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||| |||| ||||||    
T  13574211 gaaatgctaacaggtgccctgggtactggttaaggatatgaaaaaggaaaatatata 13574155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 344 - 379
Target Start/End: Original strand, 22887780 - 22887815
Alignment:
Q  344 tggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22887780 tggttaaggatatgaaaaaagaaattatatagtagt 22887815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 22068512 - 22068440
Alignment:
Q  310 tgtagaagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||| |||||||||||||||  ||||||   ||| ||||||||||||| ||||||| | ||||||||||||||    
T  22068512 tgtataagggaaatgctaacaagtgcccccggggcactggttaaggatatgaaaaagggaattatatagtagt 22068440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 4022666 - 4022600
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||||||||||   || ||||| ||||| || ||||||||||||||| ||||||||    
T  4022666 aagggaaatgctaactggtgcccacgggatactgattaagaatatgaaaaaagaaatta-atagtagt 4022600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 32361056 - 32360990
Alignment:
Q  316 agggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||| |||||||   ||| ||||||||||||| |||||||  |||||||||| ||||    
T  32361056 agggaaatgctaaccggtgcccccggggcactggttaaggatgtgaaaaagaaaattatataatagt 32360990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 18276802 - 18276736
Alignment:
Q  315 aagggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||| ||||||||||||  ||| ||||||||||||| ||||||| ||||||||||||||||    
T  18276802 aagggaaatgttaactggtgcccctgggcactggttaaggatatgaaaaaggaaattatatagtagt 18276736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 29451301 - 29451236
Alignment:
Q  316 agggaaatgctaactggtgcc--cgggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||||||||  |||| || |||||||||| ||||||| ||||||||||||||||    
T  29451301 agggaaatgctaactggtgcctccgggcaccggttaaggatatgaaaaaggaaattatatagtagt 29451236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 1391367 - 1391299
Alignment:
Q  313 agaagggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||||| ||||| |  |||||||| |||||||| ||||||| ||||||||||||||||    
T  1391367 agaagggaaatgctaaccggtgctccggggtactgattaaggatatgaaaaaggaaattatatagtagt 1391299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 3026195 - 3026130
Alignment:
Q  315 aagggaaatgctaactggtgccc-gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||||||||||| ||| ||||||||||| | ||||||| ||||||||| ||||||    
T  3026195 aagggaaatgctaactggtgccccgggcactggttaagggtatgaaaaatgaaattatacagtagt 3026130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 20897946 - 20898013
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||   ||| ||||||||||||| ||||||| ||||||||||||||||    
T  20897946 aagggaaatgctaaccggtgcccccagggcactggttaaggatatgaaaaaggaaattatatagtagt 20898013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 23402136 - 23402201
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagta 377  Q
    ||||||||||||||||||||||    ||| ||||||||||||| ||||||| ||||||||||||||    
T  23402136 aagggaaatgctaactggtgcctccggggcactggttaaggatatgaaaaaggaaattatatagta 23402201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 35043890 - 35043955
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||||| ||   ||  ||||||||||||| ||||||||||||||||||||||||    
T  35043890 gggaaatgctaactggtgtccacgggacactggttaaggatatgaaaaaagaaattatatagtagt 35043955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 3515764 - 3515831
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||   ||| ||||||||||| | ||||||| ||||||||||||||||    
T  3515764 aagggaaatgctaaccggtgcccccagggcactggttaagggtatgaaaaaggaaattatatagtagt 3515831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 12525717 - 12525784
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| ||||||    ||||||||||||||| | ||||||| ||||||||||||||||    
T  12525717 aagggaaatgctaaccggtgcctccggggtactggttaagggtatgaaaaaggaaattatatagtagt 12525784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 13529454 - 13529520
Alignment:
Q  316 agggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||    ||| ||||||||||||| ||||||| ||||||||||||||||    
T  13529454 agggaaatgctaacttgtgccttcggggcactggttaaggatgtgaaaaaggaaattatatagtagt 13529520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 27433491 - 27433557
Alignment:
Q  316 agggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||| |||||||   ||| ||||||||||| | ||||||| ||||||||||||||||    
T  27433491 agggaaatgctaaccggtgcccccggggcactggttaagggtatgaaaaaggaaattatatagtagt 27433557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 34477715 - 34477671
Alignment:
Q  335 cccgggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||    
T  34477715 cccgggcactggttaaggatatgaaaaaggaaattatatagtagt 34477671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 392096 - 392161
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| |||||||   ||| ||||||||||| | ||||||| ||||||||||||||||    
T  392096 gggaaatgctaaccggtgcccccggggcactggttaagggtatgaaaaaggaaattatatagtagt 392161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 7851347 - 7851282
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagta 377  Q
    ||||||||||||||| |||||||   ||| ||||||||||||| |||||||  |||||||||||||    
T  7851347 aagggaaatgctaaccggtgcccccagggcactggttaaggatatgaaaaagaaaattatatagta 7851282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 21878533 - 21878468
Alignment:
Q  317 gggaaatgctaactggtgcc---cgggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| ||||||   |||| || |||||||||| ||||||| ||||||||||||||||    
T  21878533 gggaaatgctaaccggtgcctcccgggcacgggttaaggatatgaaaaaggaaattatatagtagt 21878468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 344 - 379
Target Start/End: Complemental strand, 25165569 - 25165534
Alignment:
Q  344 tggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||| ||||||||||||||||||||||||    
T  25165569 tggttaaggatatgaaaaaagaaattatatagtagt 25165534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 2350680 - 2350717
Alignment:
Q  342 actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  2350680 actggttaaggatatgaaaaaggaaattatatagtagt 2350717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 12203854 - 12203919
Alignment:
Q  316 agggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||| |||||||  |||||| |||||||| | ||||||||||||||||||||||||    
T  12203854 agggaaatgctaaccggtgcccccgggtaccggttaagggtatgaaaaaagaaattatatagtagt 12203919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 12448282 - 12448347
Alignment:
Q  316 agggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||| |||||||  |||||| |||||||| | ||||||||||||||||||||||||    
T  12448282 agggaaatgctaaccggtgcccccgggtaccggttaagggtatgaaaaaagaaattatatagtagt 12448347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 33357317 - 33357250
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||||||||||   | | ||||||||||||| ||||||| ||||||||||||||||    
T  33357317 aagggaaatgctaactggtgcccccggagcactggttaaggatatgaaaaaggaaattatatagtagt 33357250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 11112638 - 11112704
Alignment:
Q  316 agggaaatgctaactggtgc--ccgggt-actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||||||||  |||||  ||||||||||||| ||||||| ||||||||||||||||    
T  11112638 agggaaatgctaactggtgcatccgggacactggttaaggatatgaaaaaggaaattatatagtagt 11112704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 16785085 - 16785147
Alignment:
Q  315 aagggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatag 375  Q
    ||||||||||||||| ||||| |  ||| ||||||||||||| ||||||||||||||||||||    
T  16785085 aagggaaatgctaaccggtgctccagggcactggttaaggatatgaaaaaagaaattatatag 16785147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 9063239 - 9063173
Alignment:
Q  315 aagggaaatgctaactggtg-cccgg-gtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||| ||||| | ||||||||||||| ||||||| ||||||||||||||||    
T  9063239 aagggaaatgctaaccggtgtcccggagcactggttaaggatatgaaaaaggaaattatatagtagt 9063173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 34228682 - 34228745
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagta 377  Q
    ||||||||||||| |||||||   ||| ||||||||||||| ||||||| ||||||||||||||    
T  34228682 gggaaatgctaaccggtgccccgggggcactggttaaggatatgaaaaaggaaattatatagta 34228745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 9537985 - 9537945
Alignment:
Q  339 ggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  9537985 ggtactggttaaggatatgaaaaaggaaattatatagtagt 9537945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 16888728 - 16888665
Alignment:
Q  318 ggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||| |||||||  ||| || |||||||||| ||||||| ||||||||||||||||    
T  16888728 ggaaatgctaaccggtgcccccgggcacaggttaaggatatgaaaaaggaaattatatagtagt 16888665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 4648193 - 4648259
Alignment:
Q  315 aagggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||| ||  ||| |||| |||||||| ||||||| ||||||||||||||||    
T  4648193 aagggaaatgctaaccggtgtcccggggcactgattaaggatatgaaaaaggaaattatatagtagt 4648259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 12652630 - 12652695
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| |||||||   | | ||||||||||||| ||||||| ||||||||||||||||    
T  12652630 gggaaatgctaaccggtgcccctggagcactggttaaggatatgaaaaaggaaattatatagtagt 12652695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 27988689 - 27988620
Alignment:
Q  313 agaagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||||| ||||||    ||| ||||||||||||| ||||||| ||||||||||| ||||    
T  27988689 agaagggaaatgctaaccggtgcctccggggcactggttaaggatatgaaaaaggaaattatataatagt 27988620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 28045991 - 28045922
Alignment:
Q  313 agaagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||||| ||||||    ||| ||||||||||||| ||||||| ||||||||||| ||||    
T  28045991 agaagggaaatgctaaccggtgcctccggggcactggttaaggatatgaaaaaggaaattatataatagt 28045922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 30675758 - 30675693
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| |||||||   ||| ||||||||||| | ||||||| ||||||||||||||||    
T  30675758 gggaaatgctaaccggtgcccccggggcactggttaagggtatgaaaaaggaaattatatagtagt 30675693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 36730444 - 36730509
Alignment:
Q  316 agggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||| |||||||||||||||||  ||  ||| ||||||||| ||||||| ||||||||||||||||    
T  36730444 aggggaatgctaactggtgccccaggacactagttaaggatatgaaaaaggaaattatatagtagt 36730509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 379
Target Start/End: Original strand, 40831277 - 40831342
Alignment:
Q  313 agaagggaaatgctaactggtgcccgggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||||  ||||||||  ||||||||| ||| |||||||  |||||||||||||||    
T  40831277 agaagggaaatgctaaccagtgcccggc-actggttaaagatatgaaaaagaaaattatatagtagt 40831342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 168464 - 168531
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| ||||||    ||| ||||||||||| | ||||||| ||||||||||||||||    
T  168464 aagggaaatgctaaccggtgcctccggggcactggttaagggtatgaaaaaggaaattatatagtagt 168531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 13643010 - 13643077
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||| |||||||||| |||||||   ||| |||||||||||||  |||||| ||||||||||||||||    
T  13643010 aaggaaaatgctaaccggtgcccccggggcactggttaaggatacgaaaaaggaaattatatagtagt 13643077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 13743435 - 13743502
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||| |||||||||| |||||||   ||| |||||||||||||  |||||| ||||||||||||||||    
T  13743435 aaggaaaatgctaaccggtgcccccggggcactggttaaggatacgaaaaaggaaattatatagtagt 13743502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 20831711 - 20831674
Alignment:
Q  342 actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  20831711 actggttaaggatatgaaaaaggaaattatatagtagt 20831674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 37373206 - 37373270
Alignment:
Q  317 gggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| |||||||  ||  ||||||||||||| ||||||| ||||||||||| ||||    
T  37373206 gggaaatgctaaccggtgcccccggacactggttaaggatatgaaaaaggaaattatataatagt 37373270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 42035139 - 42035102
Alignment:
Q  342 actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  42035139 actggttaaggatatgaaaaaggaaattatatagtagt 42035102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 375
Target Start/End: Original strand, 21595848 - 21595907
Alignment:
Q  318 ggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatag 375  Q
    |||||||||||| |||||||  ||| ||||||||||| | ||||||| ||||||||||||    
T  21595848 ggaaatgctaaccggtgcccccgggcactggttaagggtatgaaaaaggaaattatatag 21595907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 41554122 - 41554061
Alignment:
Q  320 aaatgctaactggtgcccgggt--actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||||| |||  ||||||||||||| ||||||| ||||||||||||||||    
T  41554122 aaatgctaactggtgccccggtgcactggttaaggatatgaaaaaggaaattatatagtagt 41554061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 272219 - 272285
Alignment:
Q  316 agggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||| |||||||   ||| ||||||||||||| ||||||| ||||||||||||||||    
T  272219 agggaaatgctaaccggtgcccccggggcactggttaaggatatgaaaaaggaaattatatagtagt 272285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 18014670 - 18014737
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||||||||||   ||| |||| |||||||| |||||||  |||||||||||||||    
T  18014670 aagggaaatgctaactggtgcccccggggcactgattaaggatatgaaaaagtaaattatatagtagt 18014737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 46352632 - 46352699
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||   ||| ||||||||||||| ||||||| ||||||||| ||||||    
T  46352632 aagggaaatgctaaccggtgcccccggggcactggttaaggatatgaaaaaggaaattatacagtagt 46352699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 48725271 - 48725334
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagta 377  Q
    ||||||||||||| |||||||   ||| ||||||||||||| ||||||| ||||||||||||||    
T  48725271 gggaaatgctaaccggtgccccgggggcactggttaaggatatgaaaaaggaaattatatagta 48725334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 52520679 - 52520746
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||   ||| ||||||||||| | ||||||| ||||||||||||||||    
T  52520679 aagggaaatgctaaccggtgcccccggggcactggttaagggtatgaaaaaggaaattatatagtagt 52520746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 49893330 - 49893396
Alignment:
Q  316 agggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||| |||||||   ||| ||||||||||||| ||||||| ||||||||||| ||||    
T  49893330 agggaaatgctaaccggtgcccccggggcactggttaaggatatgaaaaaggaaattatataatagt 49893396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 52246582 - 52246644
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagt 376  Q
    ||||||||||||||||||||    ||| ||||||||||||| ||||||| |||||||||||||    
T  52246582 gggaaatgctaactggtgcctccggggcactggttaaggatatgaaaaatgaaattatatagt 52246644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 28139309 - 28139374
Alignment:
Q  317 gggaaatgctaactggtgcccg---ggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||||||||    |  ||||||||||||| ||||||||||||||| ||||||||    
T  28139309 gggaaatgctaactggtgcccccaagacactggttaaggatatgaaaaaagaaattaaatagtagt 28139374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 39074419 - 39074484
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| |||||||   ||| ||||||||||| | ||||||| ||||||||||||||||    
T  39074419 gggaaatgctaaccggtgcccccggggcactggttaagggtatgaaaaaggaaattatatagtagt 39074484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 40362769 - 40362701
Alignment:
Q  314 gaagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||||  |||||    ||| |||| |||||||| ||||||||||||||||||||||||    
T  40362769 gaagggaaatgctaacccgtgcctccggggcactgattaaggatatgaaaaaagaaattatatagtagt 40362701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 13159895 - 13159962
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| ||||| |   |||| || ||||||||| ||||||| ||||||||||||||||    
T  13159895 aagggaaatgctaaccggtgctcctggggttctagttaaggatatgaaaaaggaaattatatagtagt 13159962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 52718195 - 52718232
Alignment:
Q  342 actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  52718195 actggttaaggatatgaaaaaggaaattatatagtagt 52718232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 17333467 - 17333403
Alignment:
Q  317 gggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| |||||||  ||| ||||||||||||| ||||||| ||||||||||||||||    
T  17333467 gggaaatgctaaccggtgcccccgggcactggttaaggatatgaaaaaggaaattatatagtagt 17333403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 29657770 - 29657836
Alignment:
Q  316 agggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||| |||||||   ||| ||||||||||||| | ||||| ||||||||||||||||    
T  29657770 agggaaatgctaaccggtgcccccggggcactggttaaggatataaaaaaggaaattatatagtagt 29657836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 3097659 - 3097724
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||| ||||||||   | || |||||||||||| ||||||| ||||||||||||||||    
T  3097659 gggaaatgctaattggtgcccccggagtcctggttaaggatatgaaaaaggaaattatatagtagt 3097724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 15227737 - 15227802
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagta 377  Q
    ||||||||||||||| ||| |||   ||| ||||||||||||| ||||||| ||||||||||||||    
T  15227737 aagggaaatgctaaccggtaccccgggggcactggttaaggatatgaaaaaggaaattatatagta 15227802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 3784871 - 3784834
Alignment:
Q  342 actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  3784871 actggttaaggatatgaaaaaggaaattatatagtagt 3784834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 30657606 - 30657673
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| ||||| |   ||| ||| |||||| || ||||||||||||||||||||||||    
T  30657606 aagggaaatgctaaccggtgctcccggggcactagttaagcatatgaaaaaagaaattatatagtagt 30657673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 35700836 - 35700771
Alignment:
Q  315 aagggaaatgctaactggtg-cccgggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||| ||||||||| ||||| ||||||||||||||   ||||| ||||||||| ||||||    
T  35700836 aagggaaatgttaactggtgtcccggatactggttaaggatactaaaaaggaaattatacagtagt 35700771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 42770178 - 42770111
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||   ||| ||||||||| | | ||||||| ||||||||||||||||    
T  42770178 aagggaaatgctaaccggtgcccccggggcactggttaatggtatgaaaaaggaaattatatagtagt 42770111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 47010021 - 47010058
Alignment:
Q  342 actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  47010021 actggttaaggatatgaaaaaggaaattatatagtagt 47010058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 51368947 - 51368906
Alignment:
Q  338 gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| | ||||||| ||||||||||||||||    
T  51368947 gggtactggttaagggtatgaaaaaggaaattatatagtagt 51368906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 15282675 - 15282635
Alignment:
Q  339 ggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||| |||||||  |||||||||||||||    
T  15282675 ggtactggttaaggatatgaaaaagaaaattatatagtagt 15282635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 19011180 - 19011117
Alignment:
Q  318 ggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||| |||| ||  ||| || |||||||||| ||||||| ||||||||||||||||    
T  19011180 ggaaatgctaaccggtgtcccggggcacgggttaaggatatgaaaaaggaaattatatagtagt 19011117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 29210412 - 29210478
Alignment:
Q  316 agggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||| ||||||    ||| ||||||||||| | ||||||| ||||||||||||||||    
T  29210412 agggaaatgctaaccggtgcctccggggcactggttaagggtatgaaaaaggaaattatatagtagt 29210478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 51065936 - 51065869
Alignment:
Q  315 aagggaaatgctaactggtg--cccgggt-actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| ||||  ||||||  ||||||||||||| |||||||  |||||||||||||||    
T  51065936 aagggaaatgctaaccggtgtccccgggacactggttaaggatatgaaaaagtaaattatatagtagt 51065869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 11155 - 11091
Alignment:
Q  316 agggaaatgctaactggtgcccgggt-actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||||||||| ||  ||||||||||||| ||||||| ||||||||||| ||||    
T  11155 agggaaatgctaactggtgccccggacactggttaaggatatgaaaaaggaaattatatattagt 11091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 19503289 - 19503226
Alignment:
Q  318 ggaaatgctaactggtgc--ccgggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||| |||||  ||||||||||||||||||| ||||||| ||||||||||| ||||    
T  19503289 ggaaatgctaaccggtgctcccgggtactggttaaggatatgaaaaaggaaattatatactagt 19503226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 32217045 - 32217110
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||||||||   ||| ||||||||||||| | ||||| ||||||||||||||||    
T  32217045 gggaaatgctaactggtgcccccggggcactggttaaggatataaaaaaggaaattatatagtagt 32217110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 12356242 - 12356309
Alignment:
Q  315 aagggaaatgctaactggtgcccggg---tactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||  |   |||||||||||||| ||||||| ||||||||||||||||    
T  12356242 aagggaaatgctaaccggtgcccctgagatactggttaaggatatgaaaaaggaaattatatagtagt 12356309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 15186241 - 15186308
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||   ||| ||||||||||| | ||||||| ||||||||||||||||    
T  15186241 aagggaaatgctaaccggtgcccccggggcactggttaagggtatgaaaaaggaaattatatagtagt 15186308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 24679800 - 24679763
Alignment:
Q  342 actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  24679800 actggttaaggatatgaaaaaagaaattatatagtagt 24679763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 28755621 - 28755685
Alignment:
Q  317 gggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| |||| ||  ||| ||||||||||||| ||||||| ||||||||||||||||    
T  28755621 gggaaatgctaaccggtgtcccagggcactggttaaggatatgaaaaaggaaattatatagtagt 28755685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 29591187 - 29591254
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||||||||||||   ||| |||||||||| || |||| || ||||||||||||||||    
T  29591187 aagggaaatgctaactggtgcccccggggcactggttaagaatatgaataaggaaattatatagtagt 29591254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 18068066 - 18068000
Alignment:
Q  316 agggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||| |||||||   ||| ||||||||||| | ||||||| ||||||||||||||||    
T  18068066 agggaaatgctaaccggtgcccccggggcactggttaagggtatgaaaaaggaaattatatagtagt 18068000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 54054548 - 54054613
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| |||||||   ||| || |||||||||| ||||||||||||||||||| ||||    
T  54054548 gggaaatgctaaccggtgccccgggggcaccggttaaggatatgaaaaaagaaattatataatagt 54054613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 54897308 - 54897373
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| |||||||   ||| ||||||||||||| ||| ||| ||||||||||||||||    
T  54897308 gggaaatgctaaccggtgcccccggggcactggttaaggatatgagaaaggaaattatatagtagt 54897373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 789718 - 789651
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||   ||| || |||||||| | ||||||| ||||||||||||||||    
T  789718 aagggaaatgctaaccggtgcccccggggcacgggttaagggtatgaaaaaggaaattatatagtagt 789651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 4220219 - 4220260
Alignment:
Q  338 gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||| |||||||||| ||||||| ||||||||||||||||    
T  4220219 gggtacgggttaaggatatgaaaaaggaaattatatagtagt 4220260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 43944505 - 43944572
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| ||||||    ||| ||||||||||| | ||||||| ||||||||||||||||    
T  43944505 aagggaaatgctaaccggtgcctccggggcactggttaagggtatgaaaaaggaaattatatagtagt 43944572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 47232060 - 47231993
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||   | | ||||||||||||| ||||||| ||||||||||| ||||    
T  47232060 aagggaaatgctaaccggtgcccccggagcactggttaaggatgtgaaaaaggaaattatataatagt 47231993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 4269009 - 4268943
Alignment:
Q  316 agggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||| |||||||   ||| ||||||||||| | ||||||| |||| |||||||||||    
T  4269009 agggaaatgctaaccggtgcccccggggcactggttaagggtatgaaaaaggaaactatatagtagt 4268943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 10069969 - 10070034
Alignment:
Q  317 gggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| |||||||   ||| ||||||||||||| ||||||| ||||||||||||||||    
T  10069969 gggaaatgctaaccggtgcccccggggcactggttaaggatatgaaaaaggaaattatatagtagt 10070034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 13661806 - 13661873
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||   | | ||||||||||||| ||||||| ||||||||||||||||    
T  13661806 aagggaaatgctaaccggtgcccccggagcactggttaaggatatgaaaaaggaaattatatagtagt 13661873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 34651018 - 34650954
Alignment:
Q  317 gggaaatgctaactggtgccc--gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| |||||||  ||| ||||||||||| | ||||||| ||||||||||||||||    
T  34651018 gggaaatgctaaccggtgcccccgggcactggttaagggtatgaaaaaggaaattatatagtagt 34650954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 35132520 - 35132587
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| |||||||   ||  ||||||||||||| ||||||| ||||||||||||||||    
T  35132520 aagggaaatgctaaccggtgcccccgggacactggttaaggatatgaaaaaggaaattatatagtagt 35132587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 13470149 - 13470216
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| ||||||    ||| ||||||||||||| ||||||| ||||| ||||||||||    
T  13470149 aagggaaatgctaaccggtgcctatggggcactggttaaggatatgaaaaaggaaataatatagtagt 13470216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 19647816 - 19647779
Alignment:
Q  342 actggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  19647816 actggttaaggatatgaaaaaggaaattatatagtagt 19647779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 374
Target Start/End: Complemental strand, 10054540 - 10054478
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatata 374  Q
    ||||||||||||||| |||||||   ||| ||||||||||| | ||||||| |||||||||||    
T  10054540 aagggaaatgctaaccggtgcccccggggcactggttaagggtatgaaaaaggaaattatata 10054478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 374
Target Start/End: Complemental strand, 39067094 - 39067062
Alignment:
Q  342 actggttaaggatctgaaaaaagaaattatata 374  Q
    ||||||||||||| |||||||||||||||||||    
T  39067094 actggttaaggatatgaaaaaagaaattatata 39067062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 8062 - 8018
Alignment:
Q  335 cccgggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||    
T  8062 cccgggcactggttaaggatatgaaaaaggaaattatatagtagt 8018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 7309 - 7353
Alignment:
Q  335 cccgggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||    
T  7309 cccgggcactggttaaggatatgaaaaaggaaattatatagtagt 7353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 53872 - 53806
Alignment:
Q  316 agggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||||| |||||||   ||| ||||||||||| | ||||||| ||||||||||||||||    
T  53872 agggaaatgctaaccggtgcccccggggcactggttaagggtatgaaaaaggaaattatatagtagt 53806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 22959 - 23024
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagta 377  Q
    ||||||||||||||| |||||||   | | ||||||||||||| ||||||| ||||||||||||||    
T  22959 aagggaaatgctaaccggtgcccccggagcactggttaaggatatgaaaaaggaaattatatagta 23024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 6295 - 6231
Alignment:
Q  318 ggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    |||||||||||| |||||||   ||| ||||||||||||| ||||||| |||| |||||||||||    
T  6295 ggaaatgctaaccggtgcccctggggcactggttaaggatatgaaaaaggaaactatatagtagt 6231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 147093 - 147026
Alignment:
Q  315 aagggaaatgctaactggtgccc---gggtactggttaaggatctgaaaaaagaaattatatagtagt 379  Q
    ||||||||||||||| ||||| |   |||| || ||||||||| ||||||| ||||||||||||||||    
T  147093 aagggaaatgctaaccggtgctcctggggttctagttaaggatatgaaaaaggaaattatatagtagt 147026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University