View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_26 (Length: 363)
Name: NF2562_high_26
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_26 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 39082812 - 39082450
Alignment:
| Q |
1 |
ctattgccttgactgaaaatagttggggacgaacttccaccgattgcatattgttgccaatgtgtataatcattgttgaccacgtgaaagtatccgaacc |
100 |
Q |
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| T |
39082812 |
ctattgccttgactaaaaatagttggggacgaacttccaccaattgcatattgttgccaatgtgtataatcattgttgaccacatgaaagtatccgaacc |
39082713 |
T |
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| Q |
101 |
tgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcgaaataaagagtaaaaatatataacaaatggcaagtagggcttaat |
200 |
Q |
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| T |
39082712 |
tgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcaaaataaagagtaaaaatatataacaaatggcaagtagggcttaat |
39082613 |
T |
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| Q |
201 |
cattgtggcagagaaaaattaactaatttacgaaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatattttt |
300 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082612 |
tattgtggcagagaaaaattaactaatttacaaaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatattttt |
39082513 |
T |
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| Q |
301 |
gtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataatt |
363 |
Q |
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| T |
39082512 |
gtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataatt |
39082450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 31727435 - 31727087
Alignment:
| Q |
1 |
ctattgccttgactgaaaatagttggggacgaacttccaccgattgcatattgttgccaatgtgtataatcattgttgaccacgtgaaagtatccgaacc |
100 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |
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| T |
31727435 |
ctattgccttgactaaaaatagttcgggacgaacttccaccgattgcatattgttgccaatgtgtgtaatcattgttcaccacatgaaagtatccgaacc |
31727336 |
T |
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| Q |
101 |
tgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcgaaataaagagtaaaaatatataacaaatggcaagtagggcttaat |
200 |
Q |
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|||| |||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31727335 |
tgcatctgcaacattcgtgtagaaaaaatttcaaactgttaggaataa--------------gagtaaaaatatataacaaatggcaagtagggcttaat |
31727250 |
T |
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| Q |
201 |
cattgtggcagagaaaaattaactaatttacgaaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatattttt |
300 |
Q |
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| T |
31727249 |
tactgtggcagagaaaaattaactaataaacctaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatattttt |
31727150 |
T |
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| Q |
301 |
gtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataatt |
363 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31727149 |
gtcctcttcataggaatcactatgaccaaagagcataactttgttatgacgggtcatataatt |
31727087 |
T |
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