View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_28 (Length: 359)
Name: NF2562_high_28
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 8839632 - 8839299
Alignment:
| Q |
1 |
aatgctatatgtctcgaatgagatctcattgtgaattcattccgaaaaataaaggaaccaatcatgttgctatgcttaagatcgtggccagttaaaattg |
100 |
Q |
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| T |
8839632 |
aatgctatatgtctcgaatgagagc--attgtgaattcattccgaaaaataaaggaaccaatcatgttgctatgcttaggatcgtgggcagttaaaattg |
8839535 |
T |
|
| Q |
101 |
gactaattgtatttactcgtttaaaattgtggtcgtgggtgagcttgtggcttgcctagcattttcatgttatgagcattgagcactaccttggtagtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8839534 |
gactaattgtatttactcgtttaaaattgtggtcgtgggtgagcttgtggcttgcctagcattttcatgttatgagcattgagcactaccttggtagtgc |
8839435 |
T |
|
| Q |
201 |
ccctagaaaatagttgtcgtgcctaaggtgtttcttttagattaaattaataattgtaaaaagaaaaatagttatttagtcggagttttaaatcataaat |
300 |
Q |
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|||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
8839434 |
ccctaggaaatagttgtcgtgcttaaggtgtttcttttaaattaaattaataattttaaaaagaaaattagttatttagttggagttttaaatcataaat |
8839335 |
T |
|
| Q |
301 |
ggtctcacttgtagttgagaaaaattcagctacatt |
336 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
8839334 |
ggtctcacttatagttgagaaaaattcagctacatt |
8839299 |
T |
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