View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_29 (Length: 350)
Name: NF2562_high_29
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 335
Target Start/End: Original strand, 29522776 - 29523093
Alignment:
| Q |
16 |
atgtccacagatgtaccctacaataaaaattgtatttagtggtagtttgtgtgtaataattgcaagtacttatattattcatgtttcataaatccacaca |
115 |
Q |
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| T |
29522776 |
atgtccacagatgtaccctacaataaaaattgtatttagtggtagtttgtgtgtaataattgcaagtacttat--tattcatgtttcataaatccacaca |
29522873 |
T |
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| Q |
116 |
tgtaccccaccgtttacaatgttaaataacctcctataaatgccagttatctggggtgcatgaatcacaatcttgtatgatgtttgattctatatgttaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29522874 |
tgtaccccaccgtttacaatgttaaataacctcctataaatgccagttatctggggtgcatgaatcacaatcttgtatgatgtttgattctatatgttaa |
29522973 |
T |
|
| Q |
216 |
attgtgtgattgttgataagatatgctaccattgccgaatagtgttttagtatgttatgttatactccactgtcgttatatattttcaaaaggttaccca |
315 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29522974 |
attgtgtgattgttgataagatatgctactattgccgaatagtgttttagtatgttatgttatactccactatcgttatatattttcaaaaggttaccca |
29523073 |
T |
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| Q |
316 |
ttttgtatgtttgtttttga |
335 |
Q |
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|||||||||||||||||||| |
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| T |
29523074 |
ttttgtatgtttgtttttga |
29523093 |
T |
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