View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_30 (Length: 338)
Name: NF2562_high_30
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 84 - 325
Target Start/End: Complemental strand, 428167 - 427920
Alignment:
| Q |
84 |
tacttgctcaggccactcagaagaaatttcggacatcaactcaatgattttactgctgatgacattcaatattttaccaatgacttgtgtcatacgtaag |
183 |
Q |
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| T |
428167 |
tacttgctcaggccactcagaagaaatttcggacatcaactcaatgattttactgctgatgacattcaatattttaccaatgacttgtgtcatacgtaag |
428068 |
T |
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| Q |
184 |
tatttgatcccaaacttcaaactcgtaaatcatttaaagacgaaattaaatgtgtta------nnnnnnnnnctgtagctctgccagatccaaaaattcc |
277 |
Q |
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| T |
428067 |
tatttgatcccaaacttcaaactcgtaaatcatttaaagacgaaattaaatgtgttattttttttttcttttctgtagctctgccagatgcaaaaattcc |
427968 |
T |
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| Q |
278 |
atttcaattggtgagnnnnnnnngaaaaacttatattgtgtgttatct |
325 |
Q |
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| T |
427967 |
atttcaattggtgagttttttttgaaaaacttatattgtgtgttatct |
427920 |
T |
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