View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_33 (Length: 324)
Name: NF2562_high_33
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 18984946 - 18984638
Alignment:
| Q |
1 |
attcaatcttttggagagagctcaatattcttataatgcagacacatatgacaaagcattcttctcagatggttttcatggctctttggttgaatatatg |
100 |
Q |
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| T |
18984946 |
attcaatcttttggagagagctcaatattcttataatgcagacacatatgacaaagcattcttctcagatggttttcatggctctttggttgaatatatg |
18984847 |
T |
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| Q |
101 |
gtccacgaaactgaaaagcttcatgcacaggtttttacatttttgaggcgatgaaaatatggaaaagaaaagaatttcgtgattaaaatttttgtgcttg |
200 |
Q |
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| T |
18984846 |
gtccacgaaactgaaaagcttcatgcacaggttgttacatttttgaggcgatgaaaatatggaaaagaaaagaatttcgtgatttaaatttttgtgcttg |
18984747 |
T |
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| Q |
201 |
gcttccctttttaaattaggtgggaagatatacaagcccggatgagcatgctttcttccctacaaacttacctgagccactgcttcctcccatgaagtac |
300 |
Q |
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| T |
18984746 |
gcttccctttttaaattaggtgggaagatatacaagcccggatgagcatgctttcttccctacaaacttacctgagccactgcttcctcccatgaagtac |
18984647 |
T |
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| Q |
301 |
ccacaggtt |
309 |
Q |
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| T |
18984646 |
ccacaggtt |
18984638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 4248518 - 4248460
Alignment:
| Q |
68 |
gatggttttcatggctctttggttgaatatatggtccacgaaactgaaaagcttcatgc |
126 |
Q |
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| T |
4248518 |
gatggatttcatggctctttggtagaatacatggtcagggaaactgagaagcttcatgc |
4248460 |
T |
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