View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_40 (Length: 281)
Name: NF2562_high_40
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 267
Target Start/End: Complemental strand, 10359920 - 10359655
Alignment:
| Q |
4 |
ataggtgctgagtgaataagtgaaatctttcacaaatatgaccatagatacaatatatttgtaaattatatatctttttagataaatttccttctctaaa |
103 |
Q |
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| T |
10359920 |
ataggtggtgagtgaataagtgaaatctttcacaaatatgaccatagatacaatatatttgtaaattatatatctttttagataaatttccttctctaaa |
10359821 |
T |
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| Q |
104 |
ttaaaaattggctattcgctca--atattaaaaatgggttattcataaactcatttgagtttgtatggtaatgttggcttaagatcttgaagtgcgcctc |
201 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
10359820 |
ctaaaaattggctattcattcataatattaaaaatgggttattcataaactcatttgagtttgtatggtaatgttggcttaagaccttgaagtgtgcctc |
10359721 |
T |
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| Q |
202 |
ttcttaagatctcaagttcgagtaccaattttggtgtgctagtgtagaggtcggagtaaacctggt |
267 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
10359720 |
ttctcaaaatctcaagttcgagtaccaattttggtgtgctagtgtagaggtcagtgtaaacctggt |
10359655 |
T |
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