View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_43 (Length: 274)
Name: NF2562_high_43
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 57 - 263
Target Start/End: Original strand, 7858476 - 7858682
Alignment:
| Q |
57 |
tagggaataacacacaaggatacaattctggtgccaccatttgtctccacctagttccggttagtggaagactacacctcaaactaagttttctctatct |
156 |
Q |
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| T |
7858476 |
tagggaataacacacaaggatacaattctggtgccaccatttgtccccacctagttccggttagtggaagactacacctcaagctaagttttctccatct |
7858575 |
T |
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| Q |
157 |
caactttcaaatgcgtacattcactacgtctttcaccttgtcatctacaccttccaggctaatcatgagtattcttacctcgtctttccaaattgcccta |
256 |
Q |
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| T |
7858576 |
caacttccaaatgcgtacattcactacgtctttcaccttgtcatctacaccttccaggctaatcatgagtatttttacctcgtttttccaaattgcccta |
7858675 |
T |
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| Q |
257 |
aagtatt |
263 |
Q |
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|||||| |
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| T |
7858676 |
gagtatt |
7858682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7858332 - 7858388
Alignment:
| Q |
1 |
gcctttaaatatcttcttctctcttgaagatccttgggcccaactacactagtcatt |
57 |
Q |
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| T |
7858332 |
gcctttaaatgtcttcttctctcttgaagatccttgggcccaactacactagtcatt |
7858388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 33350813 - 33350667
Alignment:
| Q |
85 |
tggtgccaccatttgtctccacctagttccggttagtggaagactacacctcaaactaagttttctctatctcaactttcaaatgcgtacattcactacg |
184 |
Q |
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| T |
33350813 |
tggtgccaccatttatcttcacctagtttcact-agtagaatactccacttcaagccgagttttctccacctcaacttttaaatatgtacattcactatg |
33350715 |
T |
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| Q |
185 |
tctttcaccttgtcatctacaccttccaggctaatcatgagtattctt |
232 |
Q |
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| T |
33350714 |
tctttcaccttgtcatctccacctcccacactgatcatgagtattctt |
33350667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 33351077 - 33351044
Alignment:
| Q |
18 |
tctctcttgaagatccttgggcccaactacacta |
51 |
Q |
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| T |
33351077 |
tctctcttgaagatccttggacccaactacacta |
33351044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 13295090 - 13294988
Alignment:
| Q |
131 |
cacctcaaactaagttttctctatctcaactttcaaatgcgtacattcactacgtctttcaccttgtcatctacaccttccaggctaatcatgagtattc |
230 |
Q |
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| T |
13295090 |
cacctcaagctgagctttctctacctcaacttccaaatgagtacttccactatgtctttcaccttg-caactccacctctaaggctgatcacgagtattc |
13294992 |
T |
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| Q |
231 |
ttac |
234 |
Q |
| |
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|||| |
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| T |
13294991 |
ttac |
13294988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 27907584 - 27907502
Alignment:
| Q |
93 |
ccatttgtctccacctagttccggttagtggaagactacacctcaaactaagttttctctatctcaactttcaaatgcgtacat |
176 |
Q |
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| T |
27907584 |
ccatttgtctccaccta-ttcccactagtggaagactccacctcaaaccgagtcttcttcatctcaacttccaaatgtgtacat |
27907502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 16136294 - 16136217
Alignment:
| Q |
88 |
tgccaccatttgtctccacctagttccggttagtggaagactacacctcaaactaagttttctctatctcaactttcaa |
166 |
Q |
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| T |
16136294 |
tgccaccatttgtctccacctag-tcccgatagtggaagactccatctcaagatgagatttctctacctcaaatttcaa |
16136217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 32608738 - 32608647
Alignment:
| Q |
143 |
agttttctctatctcaactttcaaatgcgtacattcactacgtctttcaccttgtcatctacaccttccaggctaatcatgagtattcttacct |
236 |
Q |
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| T |
32608738 |
agttttctcta-ctcaacttccaaatgcatacatcgactatgtctttcaccttg-caactccacctttgaggttgaacatgagtattcttacct |
32608647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 10379760 - 10379816
Alignment:
| Q |
120 |
gtggaagactacacctcaaactaagttttctctatctcaactttcaaatgcgtacat |
176 |
Q |
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|||||||||| |||||||| | ||||| ||||||||||||||||||| | |||||| |
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| T |
10379760 |
gtggaagactccacctcaagatgagtttcctctatctcaactttcaaacgtgtacat |
10379816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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