View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2562_high_44 (Length: 271)

Name: NF2562_high_44
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2562_high_44
NF2562_high_44
[»] chr4 (5 HSPs)
chr4 (15-261)||(3746221-3746467)
chr4 (178-261)||(13538252-13538336)
chr4 (169-261)||(31351661-31351754)
chr4 (180-219)||(38415494-38415533)
chr4 (180-237)||(35010382-35010439)
[»] chr8 (3 HSPs)
chr8 (170-254)||(1028751-1028836)
chr8 (182-237)||(28300139-28300194)
chr8 (170-214)||(19756417-19756461)
[»] chr1 (1 HSPs)
chr1 (170-257)||(2098777-2098864)
[»] chr7 (6 HSPs)
chr7 (179-260)||(37307687-37307769)
chr7 (178-261)||(9667228-9667312)
chr7 (178-214)||(27227261-27227297)
chr7 (174-236)||(23982068-23982130)
chr7 (179-236)||(24250144-24250201)
chr7 (178-214)||(47684484-47684520)
[»] chr3 (3 HSPs)
chr3 (179-261)||(9737574-9737657)
chr3 (169-214)||(52910376-52910421)
chr3 (178-214)||(11988928-11988964)
[»] chr2 (2 HSPs)
chr2 (169-214)||(37123631-37123676)
chr2 (178-214)||(8915639-8915675)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 3746221 - 3746467
Alignment:
Q  15 agagtgattttgatgctaactctagagaagccaaagtagtgaaggagagaagagaataatggaagatgaatgaagtgtagctaagaggggtttgtttata 114  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3746221 agagtgattttgatgctaactctagagaaaccaaaatagtgaaggagagaagagaataatggaagatgaatgaagtgtagccaagaggggtttgtttata 3746320  T
Q  115 agacaccaaatatagagggagaaaagtgaactaaaaaggacaaaagannnnnnnatcaggtaatctagtggctagattcaaacacattatgtatggagaa 214  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||       |||| |||| |||| ||||||||| | ||||||||| | |||||||    
T  3746321 agacaacaagtatagagggagaaaagtgaactaaaaaggacaaaagatttttttatcaagtaacctagcggctagatttacacacattatatgtggagaa 3746420  T
Q  215 atggaaaatacagggttcgaacctcacccctacacataatatctctg 261  Q
    |||| |||| | |||||||||||||||||||||||||||||||||||    
T  3746421 atgggaaatccggggttcgaacctcacccctacacataatatctctg 3746467  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 13538252 - 13538336
Alignment:
Q  178 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 261  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  13538252 tctagtggctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 13538336  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 31351661 - 31351754
Alignment:
Q  169 atcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctg 261  Q
    |||| ||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| | | ||||||||| | |||||| |||| | ||||||||    
T  31351661 atcaagtagtctagtggctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaattatctctg 31351754  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 38415494 - 38415533
Alignment:
Q  180 tagtggctagattcaaacacattatgtatggagaaatgga 219  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  38415494 tagtggctagattcacacacattatgtatgaagaaatgga 38415533  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 35010382 - 35010439
Alignment:
Q  180 tagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 237  Q
    ||||||||||||||| ||||||||||| ||||||| ||| |||| | | |||||||||    
T  35010382 tagtggctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaacc 35010439  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 254
Target Start/End: Complemental strand, 1028836 - 1028751
Alignment:
Q  170 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataat 254  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||| || | ||| | | |||||||||||| ||||| ||||||||    
T  1028836 tcaggtagtctagtggctagattcacacacattatgtatgaagaagtgaagaatccggagttcgaacctcagcccctgcacataat 1028751  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 28300194 - 28300139
Alignment:
Q  182 gtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 237  Q
    ||||||||||||| ||||||||||||||||||| |||  ||| | |||||||||||    
T  28300194 gtggctagattcacacacattatgtatggagaagtggggaatccggggttcgaacc 28300139  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 19756417 - 19756461
Alignment:
Q  170 tcaggtaatctagtggctagattcaaacacattatgtatggagaa 214  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||    
T  19756417 tcaggtagcctagtggctagattcacacacattatgtgtggagaa 19756461  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 2098864 - 2098777
Alignment:
Q  170 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatc 257  Q
    |||| |||||||||||||||||||| ||||||||| | ||||||| |||| ||| | ||||||| |   | |||||||||||||||||    
T  2098864 tcagataatctagtggctagattcacacacattatatgtggagaagtggagaatccggggttcggattccgcccctacacataatatc 2098777  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 37307769 - 37307687
Alignment:
Q  179 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctct 260  Q
    |||||||||||||||||||||||||| | ||||||| |||  ||| | | ||||||||| | ||||| |||||||||||||||    
T  37307769 ctagtggctagattcaaacacattatttgtggagaagtggggaatccggagttcgaaccccgaccccgacacataatatctct 37307687  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 9667228 - 9667312
Alignment:
Q  178 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 261  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  9667228 tctagtggctggattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 9667312  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 27227261 - 27227297
Alignment:
Q  178 tctagtggctagattcaaacacattatgtatggagaa 214  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27227261 tctagtggctagattcaaacacattatgtgtggagaa 27227297  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 23982130 - 23982068
Alignment:
Q  174 gtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 236  Q
    ||||||||||||||||||||| |||||||||||   |||||||||| ||| | | ||||||||    
T  23982130 gtaatctagtggctagattcacacacattatgtgcagagaaatggagaatccggagttcgaac 23982068  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 24250144 - 24250201
Alignment:
Q  179 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 236  Q
    |||||| ||||||||| ||||||||||| |||| || |||| ||| ||||||||||||    
T  24250144 ctagtgactagattcacacacattatgtgtggaaaagtggagaatccagggttcgaac 24250201  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 47684484 - 47684520
Alignment:
Q  178 tctagtggctagattcaaacacattatgtatggagaa 214  Q
    |||| |||||||||||| |||||||||||||||||||    
T  47684484 tctattggctagattcacacacattatgtatggagaa 47684520  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 9737574 - 9737657
Alignment:
Q  179 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaa-cctcacccctacacataatatctctg 261  Q
    ||||||| || ||||| ||||||||||| | ||||||| |||||| |  |||||||| ||| |||||| |||||||||||||||    
T  9737574 ctagtggttatattcacacacattatgtgtagagaaatagaaaattcgaggttcgaaccctgacccctgcacataatatctctg 9737657  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 52910376 - 52910421
Alignment:
Q  169 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 214  Q
    |||||||| ||||||| ||||||||| ||||||||||| |||||||    
T  52910376 atcaggtagtctagtgactagattcacacacattatgtgtggagaa 52910421  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 11988928 - 11988964
Alignment:
Q  178 tctagtggctagattcaaacacattatgtatggagaa 214  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  11988928 tctagtggctagattcacacacattatgtgtggagaa 11988964  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 37123676 - 37123631
Alignment:
Q  169 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 214  Q
    |||| ||| ||||||||||||||||| ||||||||||| |||||||    
T  37123676 atcaagtagtctagtggctagattcacacacattatgtgtggagaa 37123631  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 8915675 - 8915639
Alignment:
Q  178 tctagtggctagattcaaacacattatgtatggagaa 214  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  8915675 tctagtggctagattcacacacattatttatggagaa 8915639  T

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