View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_45 (Length: 270)
Name: NF2562_high_45
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 42639240 - 42638988
Alignment:
| Q |
1 |
atgtattcttctttaacataataaaagtacttnnnnnnnncttagggaagtgaaaataaatctcaacattaacggtacacccnnnnnnntctcaaagttc |
100 |
Q |
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| T |
42639240 |
atgtatttttctttaacataataaaagtacttaaaaaaaacttagggaagtgaaaataaatctcaacattaacggcacacccaaaaaaatctcaaagttc |
42639141 |
T |
|
| Q |
101 |
acaacaataacaaatannnnnnngaaacaatttctacattgttatatatattttnnnnnnntctacgttgttgttgtgcttgaattataaatatactagt |
200 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||||||| |
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| T |
42639140 |
acaacgataacaaatatttttttgaaacaatttctacattgttatatatattttaaaaaaatctac---gttgttgtacttgaattataa--atactagt |
42639046 |
T |
|
| Q |
201 |
gttttcctttnnnnnnncaaatatcagtgtttagacgggcaatccgtgtccatcttctt |
259 |
Q |
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||||||| || ||||| |||||||||||||| |||||||||||||||||||| |
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| T |
42639045 |
gttttcc-ttaaaaaaaaaaataccagtgtttagacggacaatccgtgtccatcttctt |
42638988 |
T |
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