View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_49 (Length: 255)
Name: NF2562_high_49
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 14746473 - 14746238
Alignment:
| Q |
1 |
ataaaattctgccaatggaaaaagttggatatggtttggggctttgggcatccagttgcatacgttgtccatgaaaattaaagatggatttttcttaagt |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14746473 |
ataaaactctgccaatggaaaaagttggatatggtttggggctttgggcatccagttgcatacgttgtccatgaaaattaaagatggttttttcttaagt |
14746374 |
T |
|
| Q |
101 |
ttgattaaagatttaaggatcatttgagttgaaaaaagatgattcttatattcaagcattgaagcagcacttgcgtaaacaatggtggaaggagagagaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14746373 |
ttgattaaagatttaaggaccatttgagttgaaaaaagatgattcttatattcaagaattgaagcagcacttgcgtaaacaatggtggaaggagagagaa |
14746274 |
T |
|
| Q |
201 |
aacgaagacattgaataatggcatgtcctgctttaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
14746273 |
aacgaagacattgaataatggcatgtcctgctttaa |
14746238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 7221289 - 7221054
Alignment:
| Q |
1 |
ataaaattctgccaatggaaaaagttggatatggtttggggctttgggcatccagttgcatacgttgtccatgaaaattaaagatggatttttcttaagt |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7221289 |
ataaaactctgccaatggaaaaagttggatatggtttggggctttgggcatccagttgcatacgttgtccatgaaaattaaagatgggtttttcttaagt |
7221190 |
T |
|
| Q |
101 |
ttgattaaagatttaaggatcatttgagttgaaaaaagatgattcttatattcaagcattgaagcagcacttgcgtaaacaatggtggaaggagagagaa |
200 |
Q |
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| T |
7221189 |
ttgattaaagatttaaggaccatttgagttgaaaaaagatgattattatattcaagaattgaagcagcacttgcgtaaacaatggtggaaggagagagaa |
7221090 |
T |
|
| Q |
201 |
aacgaagacattgaataatggcatgtcctgctttaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
7221089 |
aacgaagacattgaataatggcatgtcctgctttaa |
7221054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 35905046 - 35904812
Alignment:
| Q |
1 |
ataaaattctgccaatggaaaaagttggatatggtttggggctttgggcatccagttgcatacgttgtccatgaaaattaaagatggatttttcttaagt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
35905046 |
ataaaactctgccaatggaaaaagttggatatggtttgggactttgggcatccagttgcatacgttgtccatgaaaattaaaggtgggtttttcttaagt |
35904947 |
T |
|
| Q |
101 |
ttgattaaagatttaaggatcatttgagttgaaaaaagatgattcttatattcaagcattgaagcagcacttgcgtaaacaatggtggaaggagagagaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35904946 |
ttgattaaagatttaaggaccatttgagttgaaaaaagatgatttttatattcaagaattgaagcagcacttgcgtaaacaatggtggaaggagagagaa |
35904847 |
T |
|
| Q |
201 |
aacgaagacattgaataatggcatgtcctgcttta |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
35904846 |
aacgaagacattgaataatggcatgtcctgcttta |
35904812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 46138038 - 46137803
Alignment:
| Q |
1 |
ataaaattctgccaatggaaaaagttggatatggtttggggctttgggcatccagttgcatacgttgtccatgaaaattaaagatggatttttcttaagt |
100 |
Q |
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|
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| |
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| T |
46138038 |
ataaaactctgccaatggaaaaagttggatatggattggggctttgggcatccagttgcatacgttgcccatgaaaattaaatatgagtttttcttaagt |
46137939 |
T |
|
| Q |
101 |
ttgattaaagatttaaggatcatttgagttgaaaaaagatgattcttatattcaagcattgaagcagcacttgcgtaaacaatggtggaaggagagagaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46137938 |
ttgattaaagatttaaggaccatttgagttgaaaaaagatgattcttatattcaagaattgaagcagcacttgcgtaaacaatggtggtaggagagagaa |
46137839 |
T |
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| Q |
201 |
aacgaagacattgaataatggcatgtcctgctttaa |
236 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
46137838 |
aacgaagacattgaataatgacatgtcctgctttaa |
46137803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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