View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_5 (Length: 572)
Name: NF2562_high_5
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 553
Target Start/End: Original strand, 10530810 - 10531349
Alignment:
| Q |
19 |
taacattcattacaatcaaaataataatcaatcaaattaagtgacaagcaccatctgaaactcaatatctcgggttcggcccggtaaccataataattgt |
118 |
Q |
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| T |
10530810 |
taacattcattacaatcaaaataataatcaatcaaattaagagacaagcaccatctgaaactcaatatctcgggttcggcccggtaaccataataaatgt |
10530909 |
T |
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| Q |
119 |
ccagactaacaatttcggcattactagttgagctaggttttacgaataaataaaacaacgaaattgtatacactgttacacgaaaaaatggatcagaatc |
218 |
Q |
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| T |
10530910 |
ccagactaacaatttcggcattactagttgagctaggttttacgaataaataaaacaacgaaattgtatacactgttacacgaaaaaatggatcagaatc |
10531009 |
T |
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| Q |
219 |
------aaaatcaaaggaaacgaaccttggttaaggaaatggaggaaagaacgaactatgcgatgagagagaggggaatcggtggtgatgcgattgtgcg |
312 |
Q |
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| T |
10531010 |
aaaatcaaaatcaaaggatacgaaccttggttaaggaaatggaggaaagaacgaactatgcgatgagagagaggggaatcggtggtgatgcgattgtgcg |
10531109 |
T |
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| Q |
313 |
acatgttgaagaagaacgctagattgtgaaggaagtgttcatttctttgttgtggagtttttatttgaggaaatgattctagaaagttcgcacgacaaat |
412 |
Q |
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| T |
10531110 |
acatgttgaagaagaacgctagattgtgaaggaagtgttcatttctttgctgtggagtttttatttgaggaaatgattctagaaagttcgcacgacaaat |
10531209 |
T |
|
| Q |
413 |
agcgaatcgagatataggagtagactttactgtaaggactgtacaatgatgtcaannnnnnnnnnnnnnnnnnnnaagaaaggtaactcatttcatttaa |
512 |
Q |
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| T |
10531210 |
agcgaatcgagatataggagtagactttactgtaa-gactgtacaatgatgtcaatttttttttcttctttttttaagaaaggtaattcatttcatttga |
10531308 |
T |
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| Q |
513 |
tctaaaatattataatgaatacaatccgaaggatgcaagaa |
553 |
Q |
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| T |
10531309 |
tctaaaatattataatgaatacaatccggaggatgcaagaa |
10531349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 491 - 546
Target Start/End: Complemental strand, 44759143 - 44759088
Alignment:
| Q |
491 |
aaaggtaactcatttcatttaatctaaaatattataatgaatacaatccgaaggat |
546 |
Q |
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| T |
44759143 |
aaaggtaactcatttgattttatccaaaatattatagtgaatacaatcggaaggat |
44759088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 4434784 - 4434841
Alignment:
| Q |
490 |
gaaaggtaactcatttcatttaatctaaaatattataatgaatacaatccgaaggatg |
547 |
Q |
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| T |
4434784 |
gaaaggtaactcatttcatttcatctaaaatattagagtaaatacaatcaggaggatg |
4434841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 537
Target Start/End: Original strand, 26892036 - 26892084
Alignment:
| Q |
489 |
agaaaggtaactcatttcatttaatctaaaatattataatgaatacaat |
537 |
Q |
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| T |
26892036 |
agaaaggtaactcatttcatttcatccaaaatattagagtgaatacaat |
26892084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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