View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_55 (Length: 249)
Name: NF2562_high_55
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_55 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 6592031 - 6592198
Alignment:
| Q |
83 |
tatatacatgtaaacgcaagttcct-ttaaagttgaaattgaaaccgataaataaggaaataaatgctacttattcaagcatgtaactgttaaaatttgg |
181 |
Q |
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| T |
6592031 |
tatatatatataaaagaaagttcctattaaagttgaaattgaaaccgataaatcaggaaataaatggtacctattcaagcatgtaacggttaaaacttgg |
6592130 |
T |
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| Q |
182 |
agtagaaaaaacgtgttgcaagcaaaatatatgactcagccaaaat-aaaagggagataacaagattaa |
249 |
Q |
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| T |
6592131 |
agtag-aaaaacgtgttgcaagcaaaatatatgactcagccaaaataaaaagggaggtaacaagattaa |
6592198 |
T |
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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 39657051 - 39657122
Alignment:
| Q |
75 |
atatgtcgtatatacatgtaaacgcaagttcct-ttaaagttgaaattgaaaccgataaataaggaaataaa |
145 |
Q |
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| T |
39657051 |
atatgttgtatatacatgtaaaagcaagttcctattaaagttgaaattgaaaccgataaatcaggaaataaa |
39657122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 27648208 - 27648115
Alignment:
| Q |
100 |
aagttcct-ttaaagttgaaattgaaaccgataaataaggaaataaatgctacttattcaagcatgtaactgttaaaatttggagtagaaaaaac |
193 |
Q |
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| T |
27648208 |
aagttcctattaaagtgcaaaatgaaaccaaaaaattagggaataattgctacttaatcaagcttgtaacagttaaactt-ggagtagaaaaaac |
27648115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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