View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_6 (Length: 544)
Name: NF2562_high_6
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 10 - 525
Target Start/End: Original strand, 3572054 - 3572569
Alignment:
| Q |
10 |
agtgagatgaacgatgaaatacagttgagcacgctccaatcactgatacatttacatgacatctgcagggggataatggaccaacatgttctttcgcctt |
109 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572054 |
agtgagataaacgatgaaatacagttgagcacgctccaatcactgatacatttacatgacatctgcagggggataatggaccaacatgttctttcgcctt |
3572153 |
T |
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| Q |
110 |
tgcatgaattctcttgtgaattacttttggatacacgggaaggtatcgatgaatagtttcatcttcattttgttgtcgtttttcaatctttcgatttact |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572154 |
tgcatgaattctcttgtgaattacttttggatacacgggaaggtatcgatgaatagtttcatcttcattttgttgtcgtttttcaatctttcgatttact |
3572253 |
T |
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| Q |
210 |
tatcagtctcgaatgtcatcactatatttccttgtgaatgaatgcgatgtgagtccagcagttaagccatgtagagtaatattgaaccagacacttgttt |
309 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572254 |
tatcagtctcgaatgtcatcactaaatttccttgtgaatgaatgcgatgtgagtccagcagttaagccatgtagagtaatattgaaccagacacttgttt |
3572353 |
T |
|
| Q |
310 |
cattcctggaaaataatgtaacatatggtgaattgctgatacagggaacttcaaaatgccataaagagtattcacttcaaaatgccaaaactgagagtta |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572354 |
cattcctggaaaataatgtaacatatggtgaattgctgatacagggaacttcaaaatgccataaagagtattcacttcaaaatgccaaaactgagagtta |
3572453 |
T |
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| Q |
410 |
tataacaagatttcacaatttaatttaagcttacaaaatcaaattattggtgataagccagtttattgtaaccaattcttttactttgacagcatcaaaa |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572454 |
tataacaagatttcacaatttaatttaagcttacaaaatcaaattattggtgataagccagtttattgtaaccaattcttttactttgacagcatcaaaa |
3572553 |
T |
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| Q |
510 |
cgaattccatgatagt |
525 |
Q |
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|||||||||||||||| |
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| T |
3572554 |
cgaattccatgatagt |
3572569 |
T |
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