View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_68 (Length: 219)
Name: NF2562_high_68
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_68 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 1685231 - 1685432
Alignment:
| Q |
1 |
ttaacgtcgttattttattgaagctttgaaaactattagtgtaagtgtat--ttttgaagtttatctttnnnnnnntcaggatgagtttgatgaaaccac |
98 |
Q |
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| T |
1685231 |
ttaacatcgttattttattgaagcttttaagactaatagtgtaagtgtatgtttttgaagtttatctttaaaaaaatcaggatgagtttgatgaaatcac |
1685330 |
T |
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| Q |
99 |
agtgacatccttatttaattttattgaaacttctaaaaatcagtttttccaaaattagatcat-gtcaaactcatcgttgatctaaatatagctggtata |
197 |
Q |
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| T |
1685331 |
tgtgacattgttatttaattttattgaaacttctaaaaatcagtttttccgaaattagattatattcaaactcatcgttgatctaaatatagctggtata |
1685430 |
T |
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| Q |
198 |
ct |
199 |
Q |
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|| |
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| T |
1685431 |
ct |
1685432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 1695771 - 1695812
Alignment:
| Q |
9 |
gttattttattgaagctttgaaaactattagtgtaagtgtat |
50 |
Q |
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| T |
1695771 |
gttattttattgaagctttgaaaactaatagtgtaagtgtat |
1695812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 1695925 - 1695967
Alignment:
| Q |
160 |
atgtcaaactcatcgttgatctaaatatagctggtatactaag |
202 |
Q |
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| T |
1695925 |
atgtcagactcatcgttgatctaaatatagcaggtatactaag |
1695967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 1695814 - 1695852
Alignment:
| Q |
119 |
ttattgaaacttctaaaaatcagtttttccaaaattaga |
157 |
Q |
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| T |
1695814 |
ttattgaaacttctaaaaatcagttttacccaaattaga |
1695852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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