View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2562_high_69 (Length: 217)
Name: NF2562_high_69
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_69 |
 | |
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| [»] scaffold0047 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 48158443 - 48158247
Alignment:
| Q |
1 |
tcaacatctatatgttcgtgtgttccctgctgcaagatgcatacactttcaacattatatttttgatttagaatatgcacttttgatatggagaagatga |
100 |
Q |
| |
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||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48158443 |
tcaacatgtatattttcgtgtgttccctgc---aagatgcatacactttcaacatgatatttttgatttagaatctgcacttttgatatggagaagatga |
48158347 |
T |
|
| Q |
101 |
ataatccatacaaacaagatatcatgtagcaagaaacatgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtcaataag |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
48158346 |
ataatccatacaaacaagatatcatgtagcaaggaacatgtgttgtttaaaagagggtttttaatctcaatcatttaattcttatctaagggtcaataag |
48158247 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 5449806 - 5449867
Alignment:
| Q |
137 |
catgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtcaataa |
199 |
Q |
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||||||||||||||||||| |||| ||||| |||||| |||||| |||||||||||||||| |
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| T |
5449806 |
catgtgttgtttaaaagagactttt-aatctcgatcatttaattctgatctaagggtcaataa |
5449867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 41806959 - 41806764
Alignment:
| Q |
1 |
tcaacatctatatgttcgtgtgttccctgctgcaagatgcatacactttcaacattatatttttgatttagaatatgcacttttgatatggagaagatga |
100 |
Q |
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||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41806959 |
tcaacatgtatattttcgtgtgttccctgc---aagatgcatacactttcaacatgatatttttgatttagaatctgcacttttgatatggagaagatga |
41806863 |
T |
|
| Q |
101 |
ataatccatacaaacaagatatcatgtagcaagaaacatgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtcaataa |
199 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
41806862 |
ataatccatacaaacaagatatcatgtagtaaggaacatgtgttgtttaaaaaaggatttttaatctcaatcatttaattcttatctaagggtcaataa |
41806764 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 6231635 - 6231469
Alignment:
| Q |
33 |
caagatgcatacactttcaacattatatttttgatttagaatatgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaa |
132 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6231635 |
caagatgcatacactttcaacat-atatttttgatttagaatctgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaa |
6231537 |
T |
|
| Q |
133 |
gaaacatgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtcaataag |
200 |
Q |
| |
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| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
6231536 |
ggaacatgtgttgtttaaaagagggtttttaatctcaatcatttaattcttatctaagggtcaataag |
6231469 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 6090809 - 6090979
Alignment:
| Q |
30 |
ctgcaagatgcatacactttcaacattatatttttgatttagaatatgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtag |
129 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6090809 |
ctgcaagatgcatacactttcaacatgatattttttatttagaatctgcacttttgatatggagaagatgaataatctatacaaacaagatatcatgtag |
6090908 |
T |
|
| Q |
130 |
caagaaacatgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtcaataag |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
6090909 |
caaggaacatgtgttgtttaaaagagggtttttaatctcaatcatttaattcttatctaagggtcaataag |
6090979 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 4566633 - 4566552
Alignment:
| Q |
118 |
gatatcatgtagcaagaaacatgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtcaataag |
200 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||||||| | |||||||||| |||||| |||| | ||||||||||||||||| |
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| T |
4566633 |
gataccatgtggcaaggaacatgtgttgtttaaaaga-gatttttaatctcgatcatttaattatgatctaagggtcaataag |
4566552 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 26034163 - 26033969
Alignment:
| Q |
1 |
tcaacatctatatgttcgtgtgttccctgctgcaagatgcatacactttcaacattatatttttgatttagaatatgcacttttgatatggagaagatga |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26034163 |
tcaacatgtatattttcgtgtgttccctgc---aagatgcatacactttcaacatgatatttttgatttagaatccgcacttttgatatggagaagatga |
26034067 |
T |
|
| Q |
101 |
ataatccatacaaacaagatatcatgtagcaagaaacatgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtcaataag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
26034066 |
ataatccatacaaacaagatatcatgtagcaaggaacatgtat--tttaaaagagggtttttaatctcaatcatttaattcttatctaagggtcaataag |
26033969 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 31364 - 31194
Alignment:
| Q |
30 |
ctgcaagatgcatacactttcaacattatatttttgatttagaatatgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtag |
129 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
31364 |
ctgcaagatgcatacaatttcaacatgatatttttgttttagaatctgcacttttgatatggataagatgaataattcatacaaacaagatatcatgtag |
31265 |
T |
|
| Q |
130 |
caagaaacatgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtcaataag |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| |
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|
| T |
31264 |
caaggaacatgtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataag |
31194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 5169 - 5339
Alignment:
| Q |
30 |
ctgcaagatgcatacactttcaacattatatttttgatttagaatatgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtag |
129 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
5169 |
ctgcaagatgcatacaatttcaacatgatatttttgttttagaatctgcacttttgatatggataagatgaataattcatacaaacaagatatcatgtag |
5268 |
T |
|
| Q |
130 |
caagaaacatgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtcaataag |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
5269 |
caaggaacatgtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataag |
5339 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 14834530 - 14834360
Alignment:
| Q |
30 |
ctgcaagatgcatacactttcaacattatatttttgatttagaatatgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtag |
129 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14834530 |
ctgcaagatgcatacaatttcaacatgatatttttgttttagaatctgcacttttgatatggataagatgaataattcatacaaacaagatatcatgtag |
14834431 |
T |
|
| Q |
130 |
caagaaacatgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtcaataag |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
14834430 |
caaggaacatgtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataag |
14834360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 52105990 - 52106186
Alignment:
| Q |
1 |
tcaacatctatatgttcgtgtgttccctgctgcaagatgcatacactttcaacattatatttttgatttagaatatgcacttttgatatggagaagatga |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
52105990 |
tcaacatgtatattttcgtgtgttccctac---aagatgcatacactttcaacatgatatttttgatttagaatctgcacttttgatatgaagaagatga |
52106086 |
T |
|
| Q |
101 |
ataatccatacaaacaagatatcatgtagcaagaaacatgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtcaataag |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||| ||| ||||||||||| |||||||||||| |
|
|
| T |
52106087 |
ataatctatacaaacaagatatcatgtagcaaggaacatatgttgtttaaaagagaatttttaatctcaattatttaattcttatctcagggtcaataag |
52106186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 39111248 - 39111167
Alignment:
| Q |
118 |
gatatcatgtagcaagaaacatgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtcaataag |
200 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||||||||||| |||| ||||| |||||| |||||| ||||||||||||||||| |
|
|
| T |
39111248 |
gataccatgtggcaaggaacatgtgttgtttaaaagagactttt-aatctcgatcatttaattctaatctaagggtcaataag |
39111167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 25092098 - 25092039
Alignment:
| Q |
135 |
aacatgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtc |
194 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| |||| | || | ||||||||||| |
|
|
| T |
25092098 |
aacatgtgttgtttaaaagagggcttttaatcataaccatttatttttaatctaagggtc |
25092039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 41413734 - 41413653
Alignment:
| Q |
118 |
gatatcatgtagcaagaaacatgtgttgtttaaaagagggtttttaatcttaatcattcaattcttatctaagggtcaataag |
200 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||||||| | ||||||||| |||||| |||| | ||||||||||||||||| |
|
|
| T |
41413734 |
gataccatgtggcaaggaacatgtgttgtttaaaaga-gacttttaatctcgatcatttaattttgatctaagggtcaataag |
41413653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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